Genomic analysis of Marinomonas algicola SM1966T reveals its role in marine sulfur cycling

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY
Min Zhang , Xiao-Di Wang , Yue Lin , Shu-Yan Wang , Shan Zhang , Jin Cheng , Mei-Ling Sun , Peng Wang , Hui-Hui Fu , Chun-Yang Li , Nan Zhang
{"title":"Genomic analysis of Marinomonas algicola SM1966T reveals its role in marine sulfur cycling","authors":"Min Zhang ,&nbsp;Xiao-Di Wang ,&nbsp;Yue Lin ,&nbsp;Shu-Yan Wang ,&nbsp;Shan Zhang ,&nbsp;Jin Cheng ,&nbsp;Mei-Ling Sun ,&nbsp;Peng Wang ,&nbsp;Hui-Hui Fu ,&nbsp;Chun-Yang Li ,&nbsp;Nan Zhang","doi":"10.1016/j.margen.2023.101043","DOIUrl":null,"url":null,"abstract":"<div><p>Dimethylsulfoniopropionate (DMSP) is a ubiquitous organosulfur molecule in marine environments with important roles in global sulfur and nutrient cycling, which is mainly produced by marine phytoplankton and macroalgae. <em>Marinomonas algicola</em> SM1966<sup>T</sup>, a Gram-negative, aerobic and rod-shaped bacterium, was isolated from the surface of <em>Ulva pertusa</em> (Chlorophyta) algal sample collected off the coastal areas of Rongcheng, China. Here, we report the complete genome sequence of strain SM1966<sup>T</sup> and its genomic characteristics to utilize DMSP, which may be produced by <em>Ulva pertusa.</em> The genome of strain SM1966<sup>T</sup> contains one circular chromosome (4.3 Mbp) and one circular plasmid (149,271 bp). Genomic analysis showed that strain SM1966<sup>T</sup> possesses a set of genes involved in DMSP transport, DMSP cleavage and the catabolism of acrylate, one product of DMSP cleavage. The results indicated that strain SM1966<sup>T</sup> has the capacity to utilize DMSP and produce dimethyl sulfide (DMS), a volatile infochemical with important roles in global sulfur cycling. This study provides genetic insights into DMSP catabolism by algae-associated bacteria.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.3000,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Marine genomics","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1874778723000351","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

Abstract

Dimethylsulfoniopropionate (DMSP) is a ubiquitous organosulfur molecule in marine environments with important roles in global sulfur and nutrient cycling, which is mainly produced by marine phytoplankton and macroalgae. Marinomonas algicola SM1966T, a Gram-negative, aerobic and rod-shaped bacterium, was isolated from the surface of Ulva pertusa (Chlorophyta) algal sample collected off the coastal areas of Rongcheng, China. Here, we report the complete genome sequence of strain SM1966T and its genomic characteristics to utilize DMSP, which may be produced by Ulva pertusa. The genome of strain SM1966T contains one circular chromosome (4.3 Mbp) and one circular plasmid (149,271 bp). Genomic analysis showed that strain SM1966T possesses a set of genes involved in DMSP transport, DMSP cleavage and the catabolism of acrylate, one product of DMSP cleavage. The results indicated that strain SM1966T has the capacity to utilize DMSP and produce dimethyl sulfide (DMS), a volatile infochemical with important roles in global sulfur cycling. This study provides genetic insights into DMSP catabolism by algae-associated bacteria.

褐藻藻SM1966T基因组分析揭示其在海洋硫循环中的作用
二甲基亚磺基丙酸酯(DMSP)是海洋环境中普遍存在的有机硫分子,在全球硫和营养循环中发挥着重要作用,主要由海洋浮游植物和大型藻类产生。从荣成沿海采集的水藻(Ulva pertusa,chlophyta)藻类样品中分离到一株革兰氏阴性、需氧、杆状的褐藻水藻SM1966T。在这里,我们报道了菌株SM1966T的完整基因组序列及其利用DMSP的基因组特征,该DMSP可能由白Ulva pertusa产生。菌株SM1966T的基因组包含一个环状染色体(4.3Mbp)和一个环状质粒(149271bp)。基因组分析表明,菌株SM1966T具有一组参与DMSP转运、DMSP裂解和DMSP裂解产物丙烯酸酯分解代谢的基因。结果表明,菌株SM1966T具有利用二甲基亚砜生产二甲基硫的能力,二甲基硫是一种在全球硫循环中发挥重要作用的挥发性信息化学物质。这项研究为藻类相关细菌分解代谢二甲基亚砜提供了遗传学见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信