A dual-stage transformer and MLP-based network for breast ultrasound image segmentation

IF 5.3 2区 医学 Q1 ENGINEERING, BIOMEDICAL
Guidi Lin , Mingzhi Chen , Minsheng Tan , Lingna Chen , Junxi Chen
{"title":"A dual-stage transformer and MLP-based network for breast ultrasound image segmentation","authors":"Guidi Lin ,&nbsp;Mingzhi Chen ,&nbsp;Minsheng Tan ,&nbsp;Lingna Chen ,&nbsp;Junxi Chen","doi":"10.1016/j.bbe.2023.09.001","DOIUrl":null,"url":null,"abstract":"<div><p><span>Automatic segmentation of breast lesions from ultrasound images plays an important role in computer-aided breast cancer diagnosis. Many deep learning<span> methods based on convolutional neural networks (CNNs) have been proposed for </span></span>breast ultrasound<span> image segmentation. However, breast ultrasound image segmentation is still challenging due to ambiguous lesion boundaries. We propose a novel dual-stage framework based on Transformer and Multi-layer perceptron<span><span><span> (MLP) for the segmentation of breast lesions. We combine the Swin Transformer block with an efficient pyramid squeezed attention block in a parallel design and introduce bi-directional interactions across branches, which can efficiently extract multi-scale long-range dependencies to improve the segmentation performance and robustness of the model. Furthermore, we introduce tokenized MLP block in the MLP stage to extract global contextual information while retaining fine-grained information to segment more complex breast lesions. We have conducted extensive experiments with state-of-the-art methods on three breast ultrasound datasets, including BUSI, BUL, and MT_BUS datasets. The dice coefficient reached 0.8127 ± 0.2178, and the intersection over union reached 0.7269 ± 0.2370 on </span>benign lesions<span> when the Hausdorff distance was maintained at 3.75 ± 1.83. The dice coefficient of malignant lesions is improved by 3.09% for BUSI dataset. The segmentation results on the BUL and MT_BUS datasets also show that our proposed model achieves better segmentation results than other methods. Moreover, the external experiments indicate that the proposed model provides better generalization capability for breast lesion segmentation. The dual-stage scheme and the proposed Transformer module achieve the fine-grained local information and long-range dependencies to relieve the burden of </span></span>radiologists.</span></span></p></div>","PeriodicalId":55381,"journal":{"name":"Biocybernetics and Biomedical Engineering","volume":"43 4","pages":"Pages 656-671"},"PeriodicalIF":5.3000,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biocybernetics and Biomedical Engineering","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0208521623000438","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Automatic segmentation of breast lesions from ultrasound images plays an important role in computer-aided breast cancer diagnosis. Many deep learning methods based on convolutional neural networks (CNNs) have been proposed for breast ultrasound image segmentation. However, breast ultrasound image segmentation is still challenging due to ambiguous lesion boundaries. We propose a novel dual-stage framework based on Transformer and Multi-layer perceptron (MLP) for the segmentation of breast lesions. We combine the Swin Transformer block with an efficient pyramid squeezed attention block in a parallel design and introduce bi-directional interactions across branches, which can efficiently extract multi-scale long-range dependencies to improve the segmentation performance and robustness of the model. Furthermore, we introduce tokenized MLP block in the MLP stage to extract global contextual information while retaining fine-grained information to segment more complex breast lesions. We have conducted extensive experiments with state-of-the-art methods on three breast ultrasound datasets, including BUSI, BUL, and MT_BUS datasets. The dice coefficient reached 0.8127 ± 0.2178, and the intersection over union reached 0.7269 ± 0.2370 on benign lesions when the Hausdorff distance was maintained at 3.75 ± 1.83. The dice coefficient of malignant lesions is improved by 3.09% for BUSI dataset. The segmentation results on the BUL and MT_BUS datasets also show that our proposed model achieves better segmentation results than other methods. Moreover, the external experiments indicate that the proposed model provides better generalization capability for breast lesion segmentation. The dual-stage scheme and the proposed Transformer module achieve the fine-grained local information and long-range dependencies to relieve the burden of radiologists.

基于双级变压器和mlp网络的乳腺超声图像分割
超声图像中乳腺病变的自动分割在癌症计算机辅助诊断中起着重要作用。已经提出了许多基于卷积神经网络(CNNs)的深度学习方法用于乳腺超声图像分割。然而,由于病变边界不明确,乳腺超声图像分割仍然具有挑战性。我们提出了一种新的基于Transformer和多层感知器(MLP)的双阶段框架来分割乳腺病变。我们在并行设计中将Swin-Transformer块与高效的金字塔压缩注意力块相结合,并引入跨分支的双向交互,可以有效地提取多尺度长程依赖关系,以提高模型的分割性能和鲁棒性。此外,我们在MLP阶段引入了标记化MLP块来提取全局上下文信息,同时保留细粒度信息来分割更复杂的乳腺病变。我们使用最先进的方法在三个乳腺超声数据集上进行了广泛的实验,包括BUSI、BUL和MT_BUS数据集。骰子系数达到0.8127 ± 0.2178,并集上的交点达到0.7269 ± 当Hausdorff距离保持在3.75时,良性病变为0.2370 ± 1.83.BUSI数据集的恶性病变骰子系数提高了3.09%。在BUL和MT_BUS数据集上的分割结果也表明,我们提出的模型比其他方法获得了更好的分割结果。此外,外部实验表明,该模型为乳腺病变分割提供了更好的泛化能力。双阶段方案和所提出的Transformer模块实现了细粒度的局部信息和长程依赖性,减轻了放射科医生的负担。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
16.50
自引率
6.20%
发文量
77
审稿时长
38 days
期刊介绍: Biocybernetics and Biomedical Engineering is a quarterly journal, founded in 1981, devoted to publishing the results of original, innovative and creative research investigations in the field of Biocybernetics and biomedical engineering, which bridges mathematical, physical, chemical and engineering methods and technology to analyse physiological processes in living organisms as well as to develop methods, devices and systems used in biology and medicine, mainly in medical diagnosis, monitoring systems and therapy. The Journal''s mission is to advance scientific discovery into new or improved standards of care, and promotion a wide-ranging exchange between science and its application to humans.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信