Rapid analyzing mixed STR profiles based on the global minimum residual method.

Q3 Medicine
遗传 Pub Date : 2023-10-20 DOI:10.16288/j.yczz.23-101
Xin Li, Hong Fan, Xing-Chun Zhao, Xiao-Nuo Fan, Ruo-Xia Yao
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Abstract

The analysis of mixed short tandem repeat (STR) profiles has been long considered as a difficult challenge in the forensic DNA analysis. In the context of China, the current approach to analyze mixed STR profiles depends mostly on forensic manual method. However, besides the inefficiency, this technique is also susceptible to subjective biases in interpreting analysis results, which can hardly meet up with the growing demand for STR profiles analysis. In response, this study introduces an innovative method known as the global minimum residual method, which not only predicts the proportion of each contributor within a mixture, but also delivers accurate analysis results. The global minimum residual method first gives new definitions to the mixture proportion, then optimizes the allele model. After that, it comprehensively considers all loci present in the STR profile, accumulates and sums the residual values of each locus and selects the mixture proportion with the minimum accumulative sum as the inference result. Furthermore, the grey wolf optimizer is also employed to expedite the search for the optimal value. Notably, for two-person STR profiles, the high accuracy and remarkable efficiency of the global minimum residual method can bring convenience to realize extensive STR profile analysis. The optimization scheme established in this research has exhibited exceptional outcomes in practical applications, boasting significant utility and offering an innovative avenue in the realm of mixed STR profile analysis.

基于全局最小残差法的混合STR图谱快速分析。
长期以来,混合短串联重复序列(STR)图谱的分析一直被认为是法医DNA分析中的一个难题。在中国,目前分析混合STR图谱的方法主要依赖于法医手动方法。然而,除了效率低下之外,该技术在解释分析结果时也容易受到主观偏见的影响,这很难满足STR图谱分析日益增长的需求。作为回应,这项研究引入了一种被称为全局最小残差法的创新方法,该方法不仅预测了混合物中每个贡献者的比例,而且提供了准确的分析结果。全局最小残差法首先对混合比例给出了新的定义,然后对等位基因模型进行了优化。然后,综合考虑STR图谱中存在的所有基因座,对每个基因座的残差值进行累加,并选择累加和最小的混合比例作为推理结果。此外,还采用了灰狼优化器来加快对最优值的搜索。值得注意的是,对于两人STR图谱,全局最小残差方法的高精度和显著的效率可以为实现广泛的STR图谱分析带来便利。本研究建立的优化方案在实际应用中表现出了优异的效果,具有显著的实用性,为混合STR图谱分析领域提供了一条创新途径。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
遗传
遗传 Medicine-Medicine (all)
CiteScore
2.50
自引率
0.00%
发文量
6699
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