A COMPUTATIONAL GENOME ANALYSIS OF STRAIN BACILLUS SUBTILIS MIZ-8 ISOLATED FROM BEKANG REVEALS A DISTINCT CHROMOSOME AND PLASMID CONFERRING SELECTIVE ADVANTAGE

IF 0.6 Q4 FOOD SCIENCE & TECHNOLOGY
Harini Keerthana Suresh Kumar, Trishala Gopikrishna, T. K, Kumar Perumal, Elavarashi E
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引用次数: 0

Abstract

Bacillus subtilis Miz-8 is isolated from Bekang, a traditional fermented soybean food of Mizoram, India. Here, we report computationally analyzed strain Miz-8 mapped to the annotated genome of the reference strain Bacillus subtilis subsp. natto BEST195. Miz-8 has a circular chromosome and a small plasmid with genome size of 4105264 bp and 5838 bp, respectively. Genome contains the genes responsible for synthesis of biosynthetic metabolites like surfactin, fengycin, bacillibactin, bacilysin, subtilosin A and alpha amylase production. The strain Miz-8 harbored virulence genes identical to the strain BEST195 render themselves harmless for human consumption. However, Strain Miz-8 has one intact prophage region but no integrase protein, making it incapable of lateral transfer of antimicrobials. Antibiotic resistance genes were predicted among which tmrB gene was on perfect hit. Plasmid of strain Miz-8 contains no prophage sequences and antibiotic resistance genes. Furthermore, there were several single nucleotide polymorphisms and 344 insertion-deletion polymorphisms. Bacillus subtilis Miz-8's genomic information unmasks its functional significance on human health.
从贝康分离的枯草芽孢杆菌mz -8菌株的计算基因组分析显示,它具有独特的染色体和质粒,具有选择优势
枯草芽孢杆菌mz -8是从印度米佐拉姆邦的传统发酵大豆食品Bekang中分离出来的。在这里,我们报告了计算分析菌株mz -8映射到参考菌株枯草芽孢杆菌亚sp的注释基因组。纳豆BEST195。mz -8染色体为环状,质粒较小,基因组大小分别为4105264 bp和5838 bp。基因组包含负责合成生物合成代谢物的基因,如表面素、fengycin、bacillibactin、bacilysin、subtilosin A和α淀粉酶的产生。菌株mz -8含有与菌株BEST195相同的毒力基因,因此对人类无害。然而,菌株mz -8有一个完整的前噬菌体区域,但没有整合酶蛋白,使其无法横向转移抗菌素。对抗生素耐药基因进行了预测,其中tmrB基因被完全命中。菌株mz -8质粒不含原噬菌体序列和耐药基因。此外,还存在多个单核苷酸多态性和344个插入-删除多态性。枯草芽孢杆菌mz -8的基因组信息揭示了其对人类健康的功能意义。
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来源期刊
CiteScore
1.90
自引率
0.00%
发文量
156
审稿时长
8 weeks
期刊介绍: The Journal of Microbiology, Biotechnology and Food Sciences is an Open Access, peer-reviewed online scientific journal published by the Faculty of Biotechnology and Food Sciences (Slovak University of Agriculture in Nitra). The major focus of the journal is regular publishing of original scientific articles, short communications and reviews about animal, plant and environmental microbiology (including bacteria, fungi, yeasts, algae, protozoa and viruses), microbial, animal and plant biotechnology and physiology, microbial, plant and animal genetics, molecular biology, agriculture and food chemistry and biochemistry, food control, evaluation and processing in food science and environmental sciences.
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