Ketene and Ammonia Forming Acetamide in the Interstellar Medium

IF 0.2 Q4 BIOLOGY
Akash Kothari, Ling-Zhi Zhu, Jon Babi, Natalie J. Galant, A. Rágyanszki, I. Csizmadia
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引用次数: 3

Abstract

Background: Peptide bonds are among the fundamental building blocks of life, polymerizing amino acids to form proteins that make up the structural components of living cells and regulate biochemical processes. The detection of glycine by NASA in comet Wild 2 in 2009 suggests the possibility of the formation of biomolecules in extraterrestrial environments through the interstellar medium. Detected in the dense molecular cloud Sagittarius B2, acetamide is the largest molecule containing a peptide bond and is hypothesized to be the precursor to all amino acids; as such, viability of its formation is of important biological relevance. Methods: Under a proposed mechanism of ammonia and ketene reactants, which have also been detected in dense molecular clouds in the ISM, the reaction pathway for the formation of acetamide was modelled using quantum chemical calculations in Gaussian16, using Austin-Frisch-Petersson functional with dispersion density functional theory at a 6-31G(d) basis set level of theory to optimize geometries and determine the thermodynamic properties for the reaction. Stability of the reactants, transition states, and products were examined to establish a reasonable mechanism. Conclusion: Product formation of acetamide was found to be highly exergonic and exothermic with a low energy barrier, suggesting a mechanism that is viable in the extreme density and temperature conditions found in ISM.
烯酮和氨在星际介质中形成乙酰胺
背景:肽键是生命的基本组成部分之一,聚合氨基酸形成蛋白质,构成活细胞的结构成分并调节生化过程。2009年,美国宇航局在怀尔德2号彗星上发现了甘氨酸,这表明通过星际介质在地外环境中形成生物分子的可能性。在密集的分子云人马座B2中,乙酰胺是含有肽键的最大分子,被认为是所有氨基酸的前体;因此,其形成的生存能力具有重要的生物学意义。方法:根据在ISM中密集分子云中检测到的氨和烯酮反应机理,利用量子化学计算在Gaussian16中建立了乙酰胺形成的反应途径模型,采用Austin-Frisch-Petersson泛函和分散密度泛函理论在6-31G(d)基集水平上优化几何结构并确定反应的热力学性质。考察了反应物、过渡态和产物的稳定性,建立了合理的机理。结论:乙酰胺的产物形成是一个高能量和放热的低能垒,表明在ISM中发现的极端密度和温度条件下是可行的机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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