Poaceae Chloroplast Genome Sequencing: Great Leap Forward in Recent Ten Years.

IF 16.4 1区化学 Q1 CHEMISTRY, MULTIDISCIPLINARY

Accounts of Chemical Research Pub Date : 2023-02-14 DOI:10.2174/1389202924666221201140603

Yiyu Hu, Yanqing Sun, Qian-Hao Zhu, Longjiang Fan, Jianhua Li

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Abstract

The first complete chloroplast genome of rice (Oryza sativa) was published in 1989, ushering in a new era of studies of chloroplast genomics in Poaceae. Progresses in Next-Generation Sequencing (NGS) and Third-Generation Sequencing (TGS) technologiesand in the development of genome assembly software, have significantly advanced chloroplast genomics research. Poaceae is one of the most targeted families in chloroplast genome research because of its agricultural, ecological, and economic importance. Over the last 30 years, 2,050 complete chloroplast genome sequences from 40 tribes and 282 genera have been generated, most (97%) of them in the recent ten years. The wealth of data provides the groundwork for studies on species evolution, phylogeny, genetic transformation, and other aspects of Poaceae chloroplast genomes. As a result, we have gained a deeper understanding of the properties of Poaceae chloroplast genomes. Here, we summarize the achievements of the studies of the Poaceae chloroplast genomes and envision the challenges for moving the area ahead.

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禾本科植物叶绿体基因组测序：近十年的跨越

1989年第一个完整的水稻叶绿体基因组的发表，开启了禾科植物叶绿体基因组学研究的新时代。新一代测序(NGS)和第三代测序(TGS)技术的进展以及基因组组装软件的开发，极大地推动了叶绿体基因组学的研究。禾本科植物具有重要的农业、生态和经济价值，是叶绿体基因组研究的重点科之一。在过去的30年里，已经产生了来自40个部落和282个属的2050个完整的叶绿体基因组序列，其中大部分(97%)是在最近十年产生的。这些丰富的数据为禾科叶绿体基因组的物种进化、系统发育、遗传转化等方面的研究提供了基础。由此，我们对禾本科植物叶绿体基因组的特性有了更深入的了解。本文总结了禾本科植物叶绿体基因组的研究成果，并展望了该领域未来面临的挑战。

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来源期刊

Accounts of Chemical Research 化学-化学综合

CiteScore

31.40

自引率

1.10%

发文量

312

审稿时长

2 months

期刊介绍： Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.