Correlation in plant volatile metabolites: physiochemical properties as a proxy for enzymatic pathways and an alternative metric of biosynthetic constraint

IF 1.6 3区 环境科学与生态学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Jordan A. Dowell, Chase M. Mason
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引用次数: 4

Abstract

From intra-individual regulation of metabolism to entire ecosystem functioning, the thousands of biogenic compounds produced by organisms serve as a major component of ecological and evolutionary diversity mediating interactions across scales. Earlier work considers canonical reactions, defined as reactions specified along accepted (experimentally validated or theoretically postulated) biosynthetic pathways, as the primary form of constraint on chemical diversity. An emerging understanding of non-canonical reactions (reactions which occur independently of canonical reactions) suggests that the physical chemistry of compounds may play a larger role in constraining chemo-diversity than previously thought. We selected 24 studies of plant volatile profiles, satisfying a defined set of criteria, to assess the extent of correlation among profiles attributable to either shared biosynthetic enzymes or physiochemical properties. Across studies, regardless of treatment, 0.17 (±?0.16 SD) adjusted R2 was attributed to both shared biosynthetic enzymes and physiochemical properties; however, there were no significant differences between the amount of unique variance attributed to shared enzymes (0.05?±?0.08 SD) or physiochemical properties (0.03?±?0.06 SD). The amount of unique variance explained by physiochemical properties, independent of their canonical relationships, provides a metric for evaluating the role of non-enzymatic and non-canonical reactions in constraining molecular diversity.

Abstract Image

植物挥发性代谢物的相关性:物理化学性质作为酶促途径的代理和生物合成约束的替代度量
从个体内代谢调节到整个生态系统功能,生物体产生的数千种生物源化合物是生态和进化多样性的主要组成部分,介导了跨尺度的相互作用。早期的研究认为规范反应是限制化学多样性的主要形式,规范反应被定义为按照公认的(实验验证的或理论上假设的)生物合成途径指定的反应。对非规范反应(独立于规范反应发生的反应)的新认识表明,化合物的物理化学可能在限制化学多样性方面发挥比以前认为的更大的作用。我们选择了24个植物挥发性特征的研究,满足一套定义的标准,以评估可归因于共享生物合成酶或物理化学性质的特征之间的相关性程度。在所有研究中,无论采用何种治疗方法,0.17(±0.16 SD)校正R2归因于共享的生物合成酶和物理化学性质;然而,由于酶(0.05±0.08 SD)和理化性质(0.03±0.06 SD)的差异无统计学意义。由物理化学性质解释的独特方差的数量,独立于它们的规范关系,为评估非酶和非规范反应在限制分子多样性中的作用提供了一个度量。
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来源期刊
Chemoecology
Chemoecology 环境科学-生化与分子生物学
CiteScore
4.20
自引率
0.00%
发文量
11
审稿时长
>36 weeks
期刊介绍: It is the aim of Chemoecology to promote and stimulate basic science in the field of chemical ecology by publishing research papers that integrate evolution and/or ecology and chemistry in an attempt to increase our understanding of the biological significance of natural products. Its scopes cover the evolutionary biology, mechanisms and chemistry of biotic interactions and the evolution and synthesis of the underlying natural products. Manuscripts on the evolution and ecology of trophic relationships, intra- and interspecific communication, competition, and other kinds of chemical communication in all types of organismic interactions will be considered suitable for publication. Ecological studies of trophic interactions will be considered also if they are based on the information of the transmission of natural products (e.g. fatty acids) through the food-chain. Chemoecology further publishes papers that relate to the evolution and ecology of interactions mediated by non-volatile compounds (e.g. adhesive secretions). Mechanistic approaches may include the identification, biosynthesis and metabolism of substances that carry information and the elucidation of receptor- and transduction systems using physiological, biochemical and molecular techniques. Papers describing the structure and functional morphology of organs involved in chemical communication will also be considered.
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