Genome-wide SNPs reveal clonality and population genetic structure of Nymphoides peltata in Japan (Menyanthaceae)

IF 16.4 1区化学 Q1 CHEMISTRY, MULTIDISCIPLINARY

Accounts of Chemical Research Pub Date : 2023-09-03 DOI:10.1016/j.aquabot.2023.103720

Akira Asakawa , Shoki Murakami , Sachiko Horie , Ayumi Matsuo , Yoshihisa Suyama , Shinji Fujii , Masayuki Maki

引用次数: 0

Abstract

The clonal diversity of Nymphoides peltata in Japan was estimated using genome-wide SNPs. In total, 27 clones were detected by considering the genetic distances between clones. The number of clones was much smaller than the estimate of 61 from a previous study that used SSR (Short Sequence Repeats) markers. This may be because population have diminished due to environmental deterioration over the past decade, fewer samples were analyzed in this study, or there were technical problems with the SSR markers used in the previous study. The populations of N. peltata were genetically differentiated between the western and eastern regions of the Japanese archipelago. Artificial movements may have occurred in a few populations.

查看原文本刊更多论文

全基因组单核苷酸多态性揭示了日本绒球金蝇的克隆性和群体遗传结构

利用全基因组单核苷酸多态性(SNPs)估计了日本peltata Nymphoides的克隆多样性。考虑到无性系之间的遗传距离，共检测到27个无性系。克隆数量远少于先前使用SSR(短序列重复)标记的研究估计的61个。这可能是由于近十年来环境恶化导致种群数量减少，本研究分析的样本较少，或者之前研究中使用的SSR标记存在技术问题。在日本列岛的西部和东部地区，peltata N. peltata的种群存在遗传分化。在少数种群中可能发生了人为的迁徙。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

求助全文

约1分钟内获得全文求助全文

来源期刊

Accounts of Chemical Research 化学-化学综合

CiteScore

31.40

自引率

1.10%

发文量

312

审稿时长

2 months

期刊介绍： Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.