The alternative 3′ splice site of GPNMB may promote neuronal survival after neonatal hypoxic–ischemic encephalopathy injury

Ibrain Pub Date : 2022-08-09 DOI:10.1002/ibra.12056
Guo-Jiao Chen, Shan-Shan Yan, Jing-Han Zhang, Ji Zhang, Isaac Bul Deng, Rong He
{"title":"The alternative 3′ splice site of GPNMB may promote neuronal survival after neonatal hypoxic–ischemic encephalopathy injury","authors":"Guo-Jiao Chen,&nbsp;Shan-Shan Yan,&nbsp;Jing-Han Zhang,&nbsp;Ji Zhang,&nbsp;Isaac Bul Deng,&nbsp;Rong He","doi":"10.1002/ibra.12056","DOIUrl":null,"url":null,"abstract":"<p>This study aimed to decipher the effect of glycoprotein nonmetastatic melanoma protein B (<i>GPNMB</i>) on neonatal hypoxic–ischemic encephalopathy (NHIE) and its potential molecular mechanism. The hypoxic–ischemic (HI) model was established in 7-day-old rats, and then, Zea-Longa scores and Nissl staining were performed to measure brain damage post-HI. In addition, gene sequencing was used to detect the differential expression genes (DEGs), and then, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases were used to determine the function of DEGs. Furthermore, an oxygen–glucose deprivation (OGD) model was developed in SY5Y cells and human fetal neurons, and then, the level of <i>GPNMB</i> was verified by quantitative real-time polymerase chain reaction. In addition, methyl thiazolyl tetrazolium and cell counting kit-8 assays were applied after <i>GPNMB</i> interference. Finally, the alternative splicing of <i>GPNMB</i> expression was analyzed using Splice Grapher software. The results indicated that HI induced marked neurological impairment and neuron injury in rats. Also, <i>GPNMB</i> was the most obviously upregulated gene in DEGs. Additionally, <i>GPNMB</i> was upregulated significantly in SY5Y and fetal neurons after OGD, and GPNMB-si promoted an increase in cell viability and number. Moreover, we found that the <i>GPNMB</i> alternative splicing type was the Alternative 3′ splice site, with the alternative splicing site in 143382985:143404102. Herein, <i>GPNMB</i> promotes a crucial regulatory mechanism with alternative splicing for neuronal survival after NHIE.</p>","PeriodicalId":94030,"journal":{"name":"Ibrain","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2022-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10529014/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Ibrain","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ibra.12056","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

This study aimed to decipher the effect of glycoprotein nonmetastatic melanoma protein B (GPNMB) on neonatal hypoxic–ischemic encephalopathy (NHIE) and its potential molecular mechanism. The hypoxic–ischemic (HI) model was established in 7-day-old rats, and then, Zea-Longa scores and Nissl staining were performed to measure brain damage post-HI. In addition, gene sequencing was used to detect the differential expression genes (DEGs), and then, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases were used to determine the function of DEGs. Furthermore, an oxygen–glucose deprivation (OGD) model was developed in SY5Y cells and human fetal neurons, and then, the level of GPNMB was verified by quantitative real-time polymerase chain reaction. In addition, methyl thiazolyl tetrazolium and cell counting kit-8 assays were applied after GPNMB interference. Finally, the alternative splicing of GPNMB expression was analyzed using Splice Grapher software. The results indicated that HI induced marked neurological impairment and neuron injury in rats. Also, GPNMB was the most obviously upregulated gene in DEGs. Additionally, GPNMB was upregulated significantly in SY5Y and fetal neurons after OGD, and GPNMB-si promoted an increase in cell viability and number. Moreover, we found that the GPNMB alternative splicing type was the Alternative 3′ splice site, with the alternative splicing site in 143382985:143404102. Herein, GPNMB promotes a crucial regulatory mechanism with alternative splicing for neuronal survival after NHIE.

Abstract Image

Abstract Image

Abstract Image

Abstract Image

GPNMB的替代3 '剪接位点可能促进新生儿缺氧缺血性脑病损伤后神经元的存活
本研究旨在揭示糖蛋白非转移性黑色素瘤蛋白B (GPNMB)在新生儿缺氧缺血性脑病(NHIE)中的作用及其潜在的分子机制。建立7日龄大鼠缺氧缺血性(HI)模型,采用Zea-Longa评分和Nissl染色检测HI后脑损伤。此外,采用基因测序方法检测差异表达基因(deg),然后利用基因本体和京都基因与基因组百科数据库确定差异表达基因的功能。在SY5Y细胞和人胎儿神经元中建立氧-葡萄糖剥夺(OGD)模型,通过实时定量聚合酶链反应验证GPNMB的表达水平。GPNMB干扰后进行甲基噻唑四氮唑和细胞计数试剂盒-8检测。最后,利用Splice Grapher软件分析GPNMB表达的备选剪接。结果表明,HI可引起大鼠明显的神经损伤和神经元损伤。GPNMB是DEGs中表达上调最明显的基因。此外,GPNMB在OGD后SY5Y和胎儿神经元中显著上调,GPNMB-si促进细胞活力和数量的增加。此外,我们发现GPNMB的备选剪接类型为alternative 3’剪接位点,其备选剪接位点为143382985:143404102。在这里,GPNMB通过选择性剪接促进了NHIE后神经元存活的关键调控机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
0.90
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信