Expression and Prognostic Significance of PDIA3 in Cervical Cancer.

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
International Journal of Genomics Pub Date : 2022-11-11 eCollection Date: 2022-01-01 DOI:10.1155/2022/4382645
Jing Zhang, Hui Li, Huling Li, Dandan Lin, Xiaoyan Wang, Kai Wang
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引用次数: 2

Abstract

To investigate the expression of protein disulfide isomerase A3 (PDIA3/ERP57) in cervical cancer and its clinical prognostic significance as well as its function and possible action mechanism in the progression of cervical cancer. Based on TIMER2.0 database, the human protein map (Human Protein Atlas) was used to determine the expression level of PDIA3 protein for the analysis of PDIA3 expression in 39 The Cancer Genome Atlas (TCGA) tumors. The PDIA3 expression in cervical cancer tissues in the TCGA and Genotype-Tissue Expression databases was further verified based on the GEPIA2 database to analyze the relationship between the PDIA3 expression and the pathological stage of cervical cancer patients. Immunohistochemistry was used to detect the PDIA3 expression in cervical cancer tissue microarray, including 111 cancer tissue samples and 24 adjacent cancer tissue samples, and the relationship between PDIA3 protein expression and clinical characteristics of patients with cervical cancer was analyzed. The Kaplan-Meier method and log-rank test were used for survival analysis. Based on the cBioPortal database, the Spearman's and Pearson's methods were used to analyze the correlation between PDIA3 expression and DNA methylation. The correlation between PDIA3 expression and the infiltration levels of each immune cell in cervical cancer was evaluated. The STRING was used to construct protein interaction network. Based on LinkedOmics database, the Spearman's method was used to analyze the co-expressed genes of PDIA3 in TCGA cervical cancer. The gene ontology functional enrichment analysis was performed on Top 50 differentially co-expressed genes based on DAVID database. The PDIA3 expression in cervical cancer tissues was significantly higher than that in normal tissues, which (F = 2.74, PR (>F) = 0.0436) was significantly increased with the progression of tumor stage, and PDIA3 showed strong immunoreactivity in cervical cancer tissues. In cervical cancer patients, overall survival (P = 0.014), disease-specific survival (P = 0.013), disease-free interval (P = 0.023), and progression-free interval (P = 0.001) in those with high expression of PDIA3 were significantly lower than those with low expression, suggesting that high expression of PDIA3 was associated with poor prognosis. In cervical cancer, high expression of PDIA3 was associated with DNA methylation and negatively correlated with B cell memory (r = -0.132, P = 0.021), T cell regulatory (r = -0.127, P = 0.026), monocytes (r = -0.204, P = 0), and macrophages M2 (r = -0.142, P = 0.013), whereas positively correlated with levels of NK cell activated (r = 0.162, P = 0.005) and mast cells activated (r = 0.119, P = 0.037). The genes positively correlated with PDIA3 expression included HSPA5 and PPIB, which were mainly enriched in biological processes, such as endoplasmic reticulum (ER) protein folding and ER stress response. PDIA3 can be used as a marker of poor prognosis of cervical cancer. The expression level of PDIA3 is closely related to the survival and prognosis of cervical cancer patients, DNA methylation, and immune cell infiltration.

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PDIA3在宫颈癌中的表达及预后意义。
探讨蛋白二硫异构酶A3 (PDIA3/ERP57)在宫颈癌中的表达及其临床预后意义,以及在宫颈癌进展中的作用和可能的作用机制。基于TIMER2.0数据库,利用人类蛋白图谱(human protein Atlas)测定PDIA3蛋白的表达水平,分析39例the Cancer Genome Atlas (TCGA)肿瘤中PDIA3蛋白的表达情况。以GEPIA2数据库为基础,进一步验证TCGA和Genotype-Tissue expression数据库中宫颈癌组织中PDIA3的表达,分析PDIA3表达与宫颈癌患者病理分期的关系。采用免疫组织化学方法检测111例宫颈癌组织样本及24例癌旁组织样本中PDIA3蛋白的表达,分析PDIA3蛋白表达与宫颈癌患者临床特征的关系。生存分析采用Kaplan-Meier法和log-rank检验。基于cbiopportal数据库,采用Spearman’s和Pearson’s方法分析PDIA3表达与DNA甲基化的相关性。评价宫颈癌组织中PDIA3表达与各免疫细胞浸润水平的相关性。利用STRING构建蛋白相互作用网络。基于LinkedOmics数据库,采用Spearman’s法分析TCGA宫颈癌中PDIA3共表达基因。基于DAVID数据库对Top 50个差异共表达基因进行基因本体功能富集分析。PDIA3在宫颈癌组织中的表达明显高于正常组织(F = 2.74, PR (>F) = 0.0436),随着肿瘤分期的进展,PDIA3的表达显著升高,且PDIA3在宫颈癌组织中表现出较强的免疫反应性。在宫颈癌患者中,PDIA3高表达者的总生存期(P = 0.014)、疾病特异性生存期(P = 0.013)、无病间期(P = 0.023)、无进展间期(P = 0.001)均显著低于低表达者,提示PDIA3高表达与预后不良相关。在宫颈癌中,PDIA3的高表达与DNA甲基化相关,与B细胞记忆(r = -0.132, P = 0.021)、T细胞调节(r = -0.127, P = 0.026)、单核细胞(r = -0.204, P = 0)和巨噬细胞M2 (r = -0.142, P = 0.013)呈负相关,与NK细胞活化(r = 0.162, P = 0.005)和肥大细胞活化(r = 0.119, P = 0.037)呈正相关。与PDIA3表达呈正相关的基因包括HSPA5和PPIB,这些基因主要富集于内质网蛋白折叠和内质网应激反应等生物过程中。PDIA3可作为宫颈癌预后不良的标志。PDIA3的表达水平与宫颈癌患者的生存和预后、DNA甲基化、免疫细胞浸润等密切相关。
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来源期刊
International Journal of Genomics
International Journal of Genomics BIOCHEMISTRY & MOLECULAR BIOLOGY-BIOTECHNOLOGY & APPLIED MICROBIOLOGY
CiteScore
5.40
自引率
0.00%
发文量
33
审稿时长
17 weeks
期刊介绍: International Journal of Genomics is a peer-reviewed, Open Access journal that publishes research articles as well as review articles in all areas of genome-scale analysis. Topics covered by the journal include, but are not limited to: bioinformatics, clinical genomics, disease genomics, epigenomics, evolutionary genomics, functional genomics, genome engineering, and synthetic genomics.
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