A novel methodology to describe neuronal networks activity reveals spatiotemporal recruitment dynamics of synchronous bursting states.

IF 1.5 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Journal of Computational Neuroscience Pub Date : 2021-11-01 Epub Date: 2021-04-27 DOI:10.1007/s10827-021-00786-5
Mallory Dazza, Stephane Métens, Pascal Monceau, Samuel Bottani
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引用次数: 2

Abstract

We propose a novel phase based analysis with the purpose of quantifying the periodic bursts of activity observed in various neuronal systems. The way bursts are intiated and propagate in a spatial network is still insufficiently characterized. In particular, we investigate here how these spatiotemporal dynamics depend on the mean connection length. We use a simplified description of a neuron's state as a time varying phase between firings. This leads to a definition of network bursts, that does not depend on the practitioner's individual judgment as the usage of subjective thresholds and time scales. This allows both an easy and objective characterization of the bursting dynamics, only depending on system's proper scales. Our approach thus ensures more reliable and reproducible measurements. We here use it to describe the spatiotemporal processes in networks of intrinsically oscillating neurons. The analysis rigorously reveals the role of the mean connectivity length in spatially embedded networks in determining the existence of "leader" neurons during burst initiation, a feature incompletely understood observed in several neuronal cultures experiments. The precise definition of a burst with our method allowed us to rigorously characterize the initiation dynamics of bursts and show how it depends on the mean connectivity length. Although presented with simulations, the methodology can be applied to other forms of neuronal spatiotemporal data. As shown in a preliminary study with MEA recordings, it is not limited to in silico modeling.

一种描述神经网络活动的新方法揭示了同步爆发状态的时空招募动态。
我们提出了一种新的基于相位的分析,目的是量化在各种神经元系统中观察到的周期性活动爆发。在空间网络中爆发和传播的方式仍然没有充分表征。特别地,我们在这里研究了这些时空动态如何依赖于平均连接长度。我们将神经元状态的简化描述为放电之间的时变相位。这导致了网络爆发的定义,它不依赖于从业者的个人判断作为主观阈值和时间尺度的使用。这使得爆破动力学的简单和客观的特征,只取决于系统的适当尺度。因此,我们的方法确保了更可靠和可重复的测量。我们在这里用它来描述内在振荡神经元网络中的时空过程。该分析严谨地揭示了空间嵌入网络的平均连接长度在确定突发启动过程中“领导”神经元存在的作用,这是在几个神经元培养实验中观察到的一个尚未完全理解的特征。用我们的方法对突发的精确定义使我们能够严格地描述突发的起始动力学,并显示它如何依赖于平均连接长度。虽然提出了模拟,该方法可以应用于其他形式的神经元时空数据。正如在MEA记录的初步研究中所示,它并不局限于计算机建模。
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来源期刊
CiteScore
2.00
自引率
8.30%
发文量
32
审稿时长
3 months
期刊介绍: The Journal of Computational Neuroscience provides a forum for papers that fit the interface between computational and experimental work in the neurosciences. The Journal of Computational Neuroscience publishes full length original papers, rapid communications and review articles describing theoretical and experimental work relevant to computations in the brain and nervous system. Papers that combine theoretical and experimental work are especially encouraged. Primarily theoretical papers should deal with issues of obvious relevance to biological nervous systems. Experimental papers should have implications for the computational function of the nervous system, and may report results using any of a variety of approaches including anatomy, electrophysiology, biophysics, imaging, and molecular biology. Papers investigating the physiological mechanisms underlying pathologies of the nervous system, or papers that report novel technologies of interest to researchers in computational neuroscience, including advances in neural data analysis methods yielding insights into the function of the nervous system, are also welcomed (in this case, methodological papers should include an application of the new method, exemplifying the insights that it yields).It is anticipated that all levels of analysis from cognitive to cellular will be represented in the Journal of Computational Neuroscience.
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