{"title":"A deep error correction network for compressed sensing MRI.","authors":"Liyan Sun, Yawen Wu, Zhiwen Fan, Xinghao Ding, Yue Huang, John Paisley","doi":"10.1186/s42490-020-0037-5","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>CS-MRI (compressed sensing for magnetic resonance imaging) exploits image sparsity properties to reconstruct MRI from very few Fourier k-space measurements. Due to imperfect modelings in the inverse imaging, state-of-the-art CS-MRI methods tend to leave structural reconstruction errors. Compensating such errors in the reconstruction could help further improve the reconstruction quality.</p><p><strong>Results: </strong>In this work, we propose a DECN (deep error correction network) for CS-MRI. The DECN model consists of three parts, which we refer to as modules: a guide, or template, module, an error correction module, and a data fidelity module. Existing CS-MRI algorithms can serve as the template module for guiding the reconstruction. Using this template as a guide, the error correction module learns a CNN (convolutional neural network) to map the k-space data in a way that adjusts for the reconstruction error of the template image. We propose a deep error correction network. Our experimental results show the proposed DECN CS-MRI reconstruction framework can considerably improve upon existing inversion algorithms by supplementing with an error-correcting CNN.</p><p><strong>Conclusions: </strong>In the proposed a deep error correction framework, any off-the-shelf CS-MRI algorithm can be used as template generation. Then a deep neural network is used to compensate reconstruction errors. The promising experimental results validate the effectiveness and utility of the proposed framework.</p>","PeriodicalId":72425,"journal":{"name":"BMC biomedical engineering","volume":"2 ","pages":"4"},"PeriodicalIF":0.0000,"publicationDate":"2020-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s42490-020-0037-5","citationCount":"10","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC biomedical engineering","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s42490-020-0037-5","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2020/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 10
Abstract
Background: CS-MRI (compressed sensing for magnetic resonance imaging) exploits image sparsity properties to reconstruct MRI from very few Fourier k-space measurements. Due to imperfect modelings in the inverse imaging, state-of-the-art CS-MRI methods tend to leave structural reconstruction errors. Compensating such errors in the reconstruction could help further improve the reconstruction quality.
Results: In this work, we propose a DECN (deep error correction network) for CS-MRI. The DECN model consists of three parts, which we refer to as modules: a guide, or template, module, an error correction module, and a data fidelity module. Existing CS-MRI algorithms can serve as the template module for guiding the reconstruction. Using this template as a guide, the error correction module learns a CNN (convolutional neural network) to map the k-space data in a way that adjusts for the reconstruction error of the template image. We propose a deep error correction network. Our experimental results show the proposed DECN CS-MRI reconstruction framework can considerably improve upon existing inversion algorithms by supplementing with an error-correcting CNN.
Conclusions: In the proposed a deep error correction framework, any off-the-shelf CS-MRI algorithm can be used as template generation. Then a deep neural network is used to compensate reconstruction errors. The promising experimental results validate the effectiveness and utility of the proposed framework.