Evaluating the effect of horizontal transmission on the stability of plasmids under different selection regimes.

Mobile genetic elements Pub Date : 2015-05-21 eCollection Date: 2015-05-01 DOI:10.1080/2159256X.2015.1045115
Rafael Peña-Miller, Rogelio Rodríguez-González, R Craig MacLean, Alvaro San Millan
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引用次数: 19

Abstract

In theory, plasmids can only be maintained in a population when the rate of horizontal gene transfer is larger than the combined effect of segregational loss and the decrease of fitness associated with plasmid carriage. Recent advances in genome sequencing have shown, however, that a large fraction of plasmids do not carry the genes necessary for conjugation or mobilization. So, how are so-called non-transmissible plasmids able to persist? In order to address this question, we examined a previously published evolutionary model based on the interaction between P. aeruginosa and the non-transmissible plasmid pNUK73. Both our in silico and in vitro results demonstrated that, although compensatory adaptation can decrease the rate of plasmid decay, the conditions for the maintenance of a non-transmissible plasmid are very stringent if the genes it carries are not beneficial to the bacterial host. This result suggests that apparently non-transmissible plasmids may still experience episodes of horizontal gene transfer occurring at very low frequencies, and that these scattered transmission events are sufficient to stabilize these plasmids. We conclude by discussing different genomic and microbiological approaches that could allow for the detection of these rare transmission events and thus to obtain a reliable estimate of the rate of horizontal gene transfer.

Abstract Image

Abstract Image

评价不同选择制度下水平传播对质粒稳定性的影响。
理论上,只有当水平基因转移率大于分离损失和质粒携带相关的适应度降低的综合效应时,质粒才能在群体中维持。然而,基因组测序的最新进展表明,很大一部分质粒不携带接合或动员所需的基因。那么,所谓的非传染性质粒是如何持续存在的呢?为了解决这个问题,我们研究了先前发表的基于铜绿假单胞菌与非传染性质粒pNUK73之间相互作用的进化模型。我们的计算机和体外实验结果都表明,尽管补偿性适应可以降低质粒衰变的速度,但如果质粒携带的基因对细菌宿主不利,则维持非传播质粒的条件非常严格。这一结果表明,表面上不可传播的质粒仍然可能经历水平基因转移的事件,发生在非常低的频率,这些分散的传播事件足以稳定这些质粒。最后,我们讨论了不同的基因组学和微生物学方法,这些方法可以检测这些罕见的传播事件,从而获得对水平基因转移率的可靠估计。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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