{"title":"Vision normalizing flows for the probability-informed detection of banana diseases from in-field images.","authors":"Alisa Prusokiene, Augustinas Prusokas, Renata Retkute","doi":"10.3389/fpls.2026.1937900","DOIUrl":null,"url":null,"abstract":"<p><strong>Introduction: </strong>Banana diseases impose severe production losses in tropical smallholder farming systems, yet accurate in-field visual diagnosis remains difficult because symptom expression varies across cultivars and growth stages and several diseases produce morphologically overlapping foliar signs. We therefore developed a probabilistic image-recognition framework for detecting five economically important banana diseases from in-field photographs without disease-specific fine-tuning of the vision backbone.</p><p><strong>Methods: </strong>Frozen 1,152-dimensional embeddings were extracted from the DINOv3 vision foundation model and coupled with a conditional normalizing flow. The model was trained on four publicly available datasets comprising approximately 95,000 images across eight classes spanning diseased banana plants, healthy tissue, non-banana vegetation, and general natural imagery.</p><p><strong>Results: </strong>On an independent test set, the model achieved F1 scores exceeding 0.98, average precision values of 0.9678-0.9998, and AUROC values of 0.9967-0.9998 across all five diseases evaluated as binary detection problems. Multi-class accuracy was nearperfect, with limited confusion between Yellow Sigatoka and Black Sigatoka. Because the normalizing flow estimates explicit conditional probability densities rather than decision boundaries, two complementary log-likelihood ratios were derived: a disease ratio comparing each disease class against healthy banana, and a plant ratio comparing banana against non-banana imagery.</p><p><strong>Discussion: </strong>Together, these likelihood ratios define an interpretable two-dimensional diagnostic space that simultaneously quantifies evidence for disease presence and image relevance, cleanly separating diseased plants, healthy plants, and out-ofdistribution images while flagging uncertain predictions for confirmatory testing. Batched inference costs 6.4 ms per image on a single TPU core, supporting deployment at surveillance-programme scale and providing a scalable, uncertainty-aware diagnostic tool for smallholder farming systems.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"17 ","pages":"1937900"},"PeriodicalIF":5.9000,"publicationDate":"2026-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13690962/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Plant Science","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3389/fpls.2026.1937900","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0
Abstract
Introduction: Banana diseases impose severe production losses in tropical smallholder farming systems, yet accurate in-field visual diagnosis remains difficult because symptom expression varies across cultivars and growth stages and several diseases produce morphologically overlapping foliar signs. We therefore developed a probabilistic image-recognition framework for detecting five economically important banana diseases from in-field photographs without disease-specific fine-tuning of the vision backbone.
Methods: Frozen 1,152-dimensional embeddings were extracted from the DINOv3 vision foundation model and coupled with a conditional normalizing flow. The model was trained on four publicly available datasets comprising approximately 95,000 images across eight classes spanning diseased banana plants, healthy tissue, non-banana vegetation, and general natural imagery.
Results: On an independent test set, the model achieved F1 scores exceeding 0.98, average precision values of 0.9678-0.9998, and AUROC values of 0.9967-0.9998 across all five diseases evaluated as binary detection problems. Multi-class accuracy was nearperfect, with limited confusion between Yellow Sigatoka and Black Sigatoka. Because the normalizing flow estimates explicit conditional probability densities rather than decision boundaries, two complementary log-likelihood ratios were derived: a disease ratio comparing each disease class against healthy banana, and a plant ratio comparing banana against non-banana imagery.
Discussion: Together, these likelihood ratios define an interpretable two-dimensional diagnostic space that simultaneously quantifies evidence for disease presence and image relevance, cleanly separating diseased plants, healthy plants, and out-ofdistribution images while flagging uncertain predictions for confirmatory testing. Batched inference costs 6.4 ms per image on a single TPU core, supporting deployment at surveillance-programme scale and providing a scalable, uncertainty-aware diagnostic tool for smallholder farming systems.
期刊介绍:
In an ever changing world, plant science is of the utmost importance for securing the future well-being of humankind. Plants provide oxygen, food, feed, fibers, and building materials. In addition, they are a diverse source of industrial and pharmaceutical chemicals. Plants are centrally important to the health of ecosystems, and their understanding is critical for learning how to manage and maintain a sustainable biosphere. Plant science is extremely interdisciplinary, reaching from agricultural science to paleobotany, and molecular physiology to ecology. It uses the latest developments in computer science, optics, molecular biology and genomics to address challenges in model systems, agricultural crops, and ecosystems. Plant science research inquires into the form, function, development, diversity, reproduction, evolution and uses of both higher and lower plants and their interactions with other organisms throughout the biosphere. Frontiers in Plant Science welcomes outstanding contributions in any field of plant science from basic to applied research, from organismal to molecular studies, from single plant analysis to studies of populations and whole ecosystems, and from molecular to biophysical to computational approaches.
Frontiers in Plant Science publishes articles on the most outstanding discoveries across a wide research spectrum of Plant Science. The mission of Frontiers in Plant Science is to bring all relevant Plant Science areas together on a single platform.