{"title":"Canopy and leaf vein segmentation and topology-guided localization of stem points in tobacco plants using YOLO-ODS.","authors":"Jiaxing Qing, Donghao Li, Xiwen Luo, Zhihao Zeng, Jinhong Chen, Yawen Liu, Jingqi Xu, Shan Zeng, Yukun Yang, Yu Wang","doi":"10.3389/fpls.2026.1930225","DOIUrl":null,"url":null,"abstract":"<p><p>Accurate stem point localization is critical for intelligent tobacco production but remains challenging in low-altitude nadir-view UAV imagery. This is because the visible upper stem after topping is small, weakly textured, and visually similar to surrounding canopy tissues. This study formulates stem point localization as a topology-guided geometric inference problem based on canopy and leaf vein structures. A lightweight instance segmentation model, YOLO-ODS, was developed on YOLOv11n-Seg to jointly segment tobacco canopies and leaf veins from UAV imagery. The model integrates an Orientation-Aware Convolution Module (OACM), a Dual Interactive Attention Module (DIAM), and Slide Loss to enhance directional feature representation and improve discrimination of fine-grained structures. Based on segmentation results, leaf vein skeletons are extracted and local trend lines are fitted to estimate stem points via geometric convergence under canopy constraints. Experimental results showed that YOLO-ODS achieved a Recall of 86.79%, a mask mAP@0.5 of 90.19%, and a mask mAP@0.5:0.95 of 67.20%, outperforming the YOLOv11n-Seg baseline by 2.20, 1.14, and 2.10 percentage points, respectively. For the leaf vein category, the mask mAP@0.5:0.95 reached 51.49%. With 2.86 M parameters and 10.19 GFLOPs, YOLO-ODS remained lightweight for field deployment. The proposed localization method achieved an <i>MAE</i> of 12.05 px and an <i>RMSE</i> of 12.99 px, reducing <i>MAE</i> and <i>RMSE</i> by 51.2% and 52.6%, respectively, compared with YOLOv11n-pose. These results suggest that integrating lightweight instance segmentation with leaf vein topology may provide a promising approach for improving stem point localization under complex field conditions.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"17 ","pages":"1930225"},"PeriodicalIF":5.9000,"publicationDate":"2026-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13685701/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Plant Science","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3389/fpls.2026.1930225","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0
Abstract
Accurate stem point localization is critical for intelligent tobacco production but remains challenging in low-altitude nadir-view UAV imagery. This is because the visible upper stem after topping is small, weakly textured, and visually similar to surrounding canopy tissues. This study formulates stem point localization as a topology-guided geometric inference problem based on canopy and leaf vein structures. A lightweight instance segmentation model, YOLO-ODS, was developed on YOLOv11n-Seg to jointly segment tobacco canopies and leaf veins from UAV imagery. The model integrates an Orientation-Aware Convolution Module (OACM), a Dual Interactive Attention Module (DIAM), and Slide Loss to enhance directional feature representation and improve discrimination of fine-grained structures. Based on segmentation results, leaf vein skeletons are extracted and local trend lines are fitted to estimate stem points via geometric convergence under canopy constraints. Experimental results showed that YOLO-ODS achieved a Recall of 86.79%, a mask mAP@0.5 of 90.19%, and a mask mAP@0.5:0.95 of 67.20%, outperforming the YOLOv11n-Seg baseline by 2.20, 1.14, and 2.10 percentage points, respectively. For the leaf vein category, the mask mAP@0.5:0.95 reached 51.49%. With 2.86 M parameters and 10.19 GFLOPs, YOLO-ODS remained lightweight for field deployment. The proposed localization method achieved an MAE of 12.05 px and an RMSE of 12.99 px, reducing MAE and RMSE by 51.2% and 52.6%, respectively, compared with YOLOv11n-pose. These results suggest that integrating lightweight instance segmentation with leaf vein topology may provide a promising approach for improving stem point localization under complex field conditions.
期刊介绍:
In an ever changing world, plant science is of the utmost importance for securing the future well-being of humankind. Plants provide oxygen, food, feed, fibers, and building materials. In addition, they are a diverse source of industrial and pharmaceutical chemicals. Plants are centrally important to the health of ecosystems, and their understanding is critical for learning how to manage and maintain a sustainable biosphere. Plant science is extremely interdisciplinary, reaching from agricultural science to paleobotany, and molecular physiology to ecology. It uses the latest developments in computer science, optics, molecular biology and genomics to address challenges in model systems, agricultural crops, and ecosystems. Plant science research inquires into the form, function, development, diversity, reproduction, evolution and uses of both higher and lower plants and their interactions with other organisms throughout the biosphere. Frontiers in Plant Science welcomes outstanding contributions in any field of plant science from basic to applied research, from organismal to molecular studies, from single plant analysis to studies of populations and whole ecosystems, and from molecular to biophysical to computational approaches.
Frontiers in Plant Science publishes articles on the most outstanding discoveries across a wide research spectrum of Plant Science. The mission of Frontiers in Plant Science is to bring all relevant Plant Science areas together on a single platform.