Mining buried plant trait data from the Global Biodiversity Information Facility (GBIF): Comparison and integration with multiple plant trait databases.
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引用次数: 0
Abstract
Premise: Despite the availability of several plant trait databases, significant traits remain undocumented for a substantial number of species. To address this issue, the current study explored digital text from the Global Biodiversity Information Facility (GBIF) as an innovative source of plant trait information and evaluated its capacity to reduce existing deficiencies.
Methods: Data were gathered on lifespan (LS), growth form (GF), flower color (FC), and maximum plant height (PHmax ) for vascular plants from GBIF and four common plant trait databases. The resulting dataset was used to evaluate the novelty and consistency of trait values derived from GBIF's digital text relative to those from other databases.
Results: Incorporation of GBIF-extracted trait data led to increases of 1.2-, 1.2-, 5.5-, and 2.7-fold in the number of species with documented LS, GF, FC, and PHmax traits, respectively. GBIF's trait data demonstrated high congruence with other databases, except in the case of FC. Additionally, a comprehensive dataset compiling these trait values from GBIF and the four databases was created, offering a valuable resource for future plant trait research.
Discussion: Our findings suggest that digital text in GBIF represents a significant source of plant trait information and can effectively help bridge information gaps.
期刊介绍:
Applications in Plant Sciences (APPS) is a monthly, peer-reviewed, open access journal promoting the rapid dissemination of newly developed, innovative tools and protocols in all areas of the plant sciences, including genetics, structure, function, development, evolution, systematics, and ecology. Given the rapid progress today in technology and its application in the plant sciences, the goal of APPS is to foster communication within the plant science community to advance scientific research. APPS is a publication of the Botanical Society of America, originating in 2009 as the American Journal of Botany''s online-only section, AJB Primer Notes & Protocols in the Plant Sciences.
APPS publishes the following types of articles: (1) Protocol Notes describe new methods and technological advancements; (2) Genomic Resources Articles characterize the development and demonstrate the usefulness of newly developed genomic resources, including transcriptomes; (3) Software Notes detail new software applications; (4) Application Articles illustrate the application of a new protocol, method, or software application within the context of a larger study; (5) Review Articles evaluate available techniques, methods, or protocols; (6) Primer Notes report novel genetic markers with evidence of wide applicability.