Distinct extracellular architectures shape mechanical persistence in GPVI and CLEC-2 receptor assemblies.

IF 3.6 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
PLoS Computational Biology Pub Date : 2026-10-13 eCollection Date: 2026-10-01 DOI:10.1371/journal.pcbi.1014884
Yao Zhang, Yue Cheng, Han Ni Soe, Zhipeng Xu
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引用次数: 0

Abstract

Glycoprotein VI (GPVI) and C-type lectin-like receptor 2 (CLEC-2) are platelet-activating receptors whose extracellular organization contributes to receptor association and signaling during thrombus formation, yet how alternative receptor architectures influence mechanical persistence remains unclear. We used molecular dynamics to compare a GPVI dimer based on 2GI7, a domain-swapped GPVI assembly derived from 7NMU, and a crystallographic CLEC-2 contact using the same pulling protocol and constant-force conditions. During the first 5 nm of imposed separation, reconstructed GPVI required less force and mechanical work than CLEC-2 and domain-swapped GPVI. Under constant-force loading from 400 to 600 pN, reconstructed GPVI also reached the same extension endpoint markedly earlier than the domain-swapped assembly, with passage times differing by more than an order of magnitude under several conditions. Extended pulling to approximately 10 nm produced complete loss of interreceptor heavy-atom contacts in reconstructed GPVI while local peptide and disulfide connectivity remained intact. In contrast, the domain-swapped preparation retained resistance over a larger part of the separation pathway and showed substantially greater mechanical persistence. These results show that alternative extracellular arrangements of the same receptor are not mechanically equivalent and that uncertainty in GPVI architecture can translate into large differences in force transmission and persistence under load. Such architecture-dependent persistence may influence the stability of extracellular receptor associations during thrombus formation and thereby affect the mechanical lifetime of receptor clusters under load.

不同的细胞外结构塑造了GPVI和CLEC-2受体组装的机械持久性。
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来源期刊
PLoS Computational Biology
PLoS Computational Biology BIOCHEMICAL RESEARCH METHODS-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.10
自引率
4.70%
发文量
820
审稿时长
2.5 months
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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