Janine Stam, Peter Olinga, Aswin Menke, Pieter Annaert, Klaas Nico Faber, Peter L. Horvatovich, Rainer Bischoff, Justina C. Wolters
{"title":"Toxicological Exploration of Collagenase and Benzonase on Rat Precision-Cut Liver Slices","authors":"Janine Stam, Peter Olinga, Aswin Menke, Pieter Annaert, Klaas Nico Faber, Peter L. Horvatovich, Rainer Bischoff, Justina C. Wolters","doi":"10.1021/acs.jproteome.5c01232","DOIUrl":null,"url":null,"abstract":"<p>Precision-cut liver slices (PCLSs) are an <em>ex vivo</em> liver model that allows isolation of extracellular vesicles\r\n(EVs),\r\nwhich are nano-sized particles involved in intercellular communication.\r\nHowever, EV recovery from PCLSs is hindered by adhesion to the extracellular\r\nmatrix and macromolecules such as extracellular DNA. Enzymatic treatments,\r\nsuch as collagenase (COL) and the endonuclease benzonase (BEN), can\r\naid their release, but potential effects on the tissue are unclear.\r\nHere, the effect of these enzymes separately, as well as combined,\r\nwas analyzed to determine their effects on morphology, protein content,\r\nand the proteome of the PCLS. The enzymes showed minimal effects on\r\ncell viability and protein content after two different incubation\r\ntimes, whereas morphological analysis confirmed collagen degradation\r\nby COL and COL(BEN), along with decreased ribosomal and secretory\r\nsecretory protein levels. BEN decreased the levels of proteins related\r\nto protein synthesis and degradation. Increased levels of proteins\r\nrelated to detoxification and energy production were observed upon\r\naddition of COL, BEN, and COL(BEN). This study emphasizes the potential\r\nand risks for the use of collagenase and benzonase for EV isolation\r\nfrom the PCLS.</p>","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":"25 10","pages":"5049–5061"},"PeriodicalIF":3.8000,"publicationDate":"2026-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Proteome Research","FirstCategoryId":"99","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jproteome.5c01232","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/9/17 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Precision-cut liver slices (PCLSs) are an ex vivo liver model that allows isolation of extracellular vesicles
(EVs),
which are nano-sized particles involved in intercellular communication.
However, EV recovery from PCLSs is hindered by adhesion to the extracellular
matrix and macromolecules such as extracellular DNA. Enzymatic treatments,
such as collagenase (COL) and the endonuclease benzonase (BEN), can
aid their release, but potential effects on the tissue are unclear.
Here, the effect of these enzymes separately, as well as combined,
was analyzed to determine their effects on morphology, protein content,
and the proteome of the PCLS. The enzymes showed minimal effects on
cell viability and protein content after two different incubation
times, whereas morphological analysis confirmed collagen degradation
by COL and COL(BEN), along with decreased ribosomal and secretory
secretory protein levels. BEN decreased the levels of proteins related
to protein synthesis and degradation. Increased levels of proteins
related to detoxification and energy production were observed upon
addition of COL, BEN, and COL(BEN). This study emphasizes the potential
and risks for the use of collagenase and benzonase for EV isolation
from the PCLS.
期刊介绍:
Journal of Proteome Research publishes content encompassing all aspects of global protein analysis and function, including the dynamic aspects of genomics, spatio-temporal proteomics, metabonomics and metabolomics, clinical and agricultural proteomics, as well as advances in methodology including bioinformatics. The theme and emphasis is on a multidisciplinary approach to the life sciences through the synergy between the different types of "omics".