Enhancing the Efficiency and Flexibility of AutoMeKin: Integrating ORCA and Machine-Learning Potentials

IF 5.8 1区 化学 Q2 CHEMISTRY, PHYSICAL
Omar Rodríguez-López,Emilio Martínez-Núñez,Berta Fernández,Saulo A. Vázquez
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引用次数: 0

Abstract

Abstract Automated reaction discovery is often limited by the cost of high-level refinement of large reaction networks. Here, we extend AutoMeKin, an automated reaction-discovery program, by presenting a complete integration of ORCA 6 into its high-level refinement workflow, providing access to a broad range of electronic-structure methods through a package freely available to academic users. We also integrate the UMA and MACE-OMOL-0 machine-learning interatomic potentials and Δ-ML energy corrections, enabling automated refinement of reaction networks using conventional electronic-structure methods, foundation ML potentials, or ML-corrected quantum-mechanical approaches within a unified framework. The workflow is assessed for five systems, monoethanolamine, three cyclobutadiene-derived radicals, and N-[bis(2H-triazol-4-yl)methylidene]hydroxylamine, spanning both in-distribution and challenging out-of-distribution chemistry. Comparisons with reference data show that UMA and MACE-OMOL-0 generally recover the relevant reaction mechanisms and provide energy profiles of comparable quality to DFT at substantially reduced cost. RRKM analyses further reveal that vibrational frequencies can significantly affect product population fractions, especially for loose transition states. These results show that the new implementation increases the accessibility and flexibility of AutoMeKin and further support the view that foundation ML potentials can serve as practical surrogates for DFT in automated reaction-network discovery.
提高汽车网络的效率和灵活性:整合ORCA和机器学习潜力
自动化的反应发现常常受到大型反应网络高层次精化成本的限制。在这里,我们扩展了AutoMeKin,一个自动化的反应发现程序,通过将ORCA 6完整地集成到其高级细化工作流程中,通过一个免费提供给学术用户的软件包提供广泛的电子结构方法。我们还集成了UMA和MACE-OMOL-0机器学习原子间电位和Δ-ML能量校正,从而在统一的框架内使用传统的电子结构方法、基础ML电位或ML校正的量子力学方法自动改进反应网络。评估了五种体系的工作流程,分别是单乙醇胺、三种环丁二烯衍生自由基和N-[双(2h -三唑-4-基)甲基]羟胺,涵盖了分布内化学和分布外化学。与参考数据的比较表明,UMA和MACE-OMOL-0总体上恢复了相关的反应机理,并以大幅降低的成本提供了与DFT相当质量的能量分布。RRKM分析进一步表明,振动频率可以显著影响产物总体分数,特别是对于松散的过渡态。这些结果表明,新的实现增加了AutoMeKin的可访问性和灵活性,并进一步支持了基础ML势可以作为DFT在自动反应网络发现中的实际替代品的观点。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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