Efficient and Transferable Machine Learning Potentials for Zn-Coordinated Zeolitic Imidazolate Frameworks Through Structural Diversity Sampling and Transfer Learning
{"title":"Efficient and Transferable Machine Learning Potentials for Zn-Coordinated Zeolitic Imidazolate Frameworks Through Structural Diversity Sampling and Transfer Learning","authors":"Shang-Wei Lin, Yen-Yung Wu, Li-Chiang Lin","doi":"10.1021/acs.jctc.6c01271","DOIUrl":null,"url":null,"abstract":"<p>Zeolitic Imidazolate Frameworks (ZIFs) exhibit remarkable\r\nstructural\r\nflexibility that governs many of their functional properties, yet\r\naccurately describing their dynamic behavior remains a significant\r\ncomputational challenge. Classical force fields often fail to capture\r\nframework flexibility, whereas first-principles methods are prohibitively\r\nexpensive. In this work, high-fidelity machine learning potentials\r\n(MLPs) are first developed for ZIF-8 using the equivariant Allegro\r\narchitecture. To reduce the cost associated with the development of\r\nMLPs, an active-learning-inspired structural selection strategy based\r\non the smooth overlap of atomic positions (SOAP) is implemented, allowing\r\nDFT-level accuracy to be achieved with fewer training configurations.\r\nBenchmarking against currently available models demonstrates that,\r\nwhile those models also offer reasonable energy predictions, their\r\nforce errors remain 1 order of magnitude larger than the specialized\r\nMLP developed herein with a force mean absolute error of as small\r\nas 0.016 eV/Å. Building upon these findings, a transferable MLP\r\nspanning diverse Zn-based ZIFs is further constructed. Moreover, a\r\nhierarchical transfer learning workflow is also established to enable\r\nrapid adaptation to unseen topologies with improved accuracy using\r\nonly a limited number of additional configurations. As a demonstration,\r\nMD simulations powered by the developed MLP successfully capture methane-induced\r\ngate-opening in ZIF-8, resolving the structural transition at subnanosecond\r\nresolution. Overall, this work provides a transferable, DFT-accurate\r\nmachine learning force field for Zn-based ZIFs.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"22 19","pages":"10391–10402"},"PeriodicalIF":5.8000,"publicationDate":"2026-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jctc.6c01271","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/9/30 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Zeolitic Imidazolate Frameworks (ZIFs) exhibit remarkable
structural
flexibility that governs many of their functional properties, yet
accurately describing their dynamic behavior remains a significant
computational challenge. Classical force fields often fail to capture
framework flexibility, whereas first-principles methods are prohibitively
expensive. In this work, high-fidelity machine learning potentials
(MLPs) are first developed for ZIF-8 using the equivariant Allegro
architecture. To reduce the cost associated with the development of
MLPs, an active-learning-inspired structural selection strategy based
on the smooth overlap of atomic positions (SOAP) is implemented, allowing
DFT-level accuracy to be achieved with fewer training configurations.
Benchmarking against currently available models demonstrates that,
while those models also offer reasonable energy predictions, their
force errors remain 1 order of magnitude larger than the specialized
MLP developed herein with a force mean absolute error of as small
as 0.016 eV/Å. Building upon these findings, a transferable MLP
spanning diverse Zn-based ZIFs is further constructed. Moreover, a
hierarchical transfer learning workflow is also established to enable
rapid adaptation to unseen topologies with improved accuracy using
only a limited number of additional configurations. As a demonstration,
MD simulations powered by the developed MLP successfully capture methane-induced
gate-opening in ZIF-8, resolving the structural transition at subnanosecond
resolution. Overall, this work provides a transferable, DFT-accurate
machine learning force field for Zn-based ZIFs.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.