Efficient and Transferable Machine Learning Potentials for Zn-Coordinated Zeolitic Imidazolate Frameworks Through Structural Diversity Sampling and Transfer Learning

IF 5.8 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2026-10-13 Epub Date: 2026-09-30 DOI:10.1021/acs.jctc.6c01271
Shang-Wei Lin, Yen-Yung Wu, Li-Chiang Lin
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引用次数: 0

Abstract

Zeolitic Imidazolate Frameworks (ZIFs) exhibit remarkable structural flexibility that governs many of their functional properties, yet accurately describing their dynamic behavior remains a significant computational challenge. Classical force fields often fail to capture framework flexibility, whereas first-principles methods are prohibitively expensive. In this work, high-fidelity machine learning potentials (MLPs) are first developed for ZIF-8 using the equivariant Allegro architecture. To reduce the cost associated with the development of MLPs, an active-learning-inspired structural selection strategy based on the smooth overlap of atomic positions (SOAP) is implemented, allowing DFT-level accuracy to be achieved with fewer training configurations. Benchmarking against currently available models demonstrates that, while those models also offer reasonable energy predictions, their force errors remain 1 order of magnitude larger than the specialized MLP developed herein with a force mean absolute error of as small as 0.016 eV/Å. Building upon these findings, a transferable MLP spanning diverse Zn-based ZIFs is further constructed. Moreover, a hierarchical transfer learning workflow is also established to enable rapid adaptation to unseen topologies with improved accuracy using only a limited number of additional configurations. As a demonstration, MD simulations powered by the developed MLP successfully capture methane-induced gate-opening in ZIF-8, resolving the structural transition at subnanosecond resolution. Overall, this work provides a transferable, DFT-accurate machine learning force field for Zn-based ZIFs.

通过结构多样性采样和迁移学习对锌配位沸石咪唑盐框架进行有效和可转移的机器学习潜力
沸石咪唑酸盐框架(ZIFs)具有显著的结构灵活性,这决定了它们的许多功能特性,但准确描述它们的动态行为仍然是一个重大的计算挑战。经典的力场常常无法捕捉到框架的灵活性,而第一性原理方法的成本高得令人望而却步。在这项工作中,首先使用等变Allegro架构为ZIF-8开发了高保真机器学习电位(mlp)。为了减少与mlp开发相关的成本,实现了一种基于原子位置平滑重叠(SOAP)的主动学习启发的结构选择策略,允许用更少的训练配置实现dft级别的精度。对现有模型的基准测试表明,虽然这些模型也提供了合理的能量预测,但它们的力误差仍然比本文开发的专用MLP大1个数量级,力平均绝对误差小至0.016 eV/Å。在这些发现的基础上,进一步构建了一个跨越多种锌基zif的可转移MLP。此外,还建立了一个分层迁移学习工作流,以便仅使用有限数量的附加配置就能快速适应未见过的拓扑,并提高准确性。作为演示,由开发的MLP驱动的MD模拟成功地捕获了甲烷诱导的ZIF-8门打开,以亚纳秒的分辨率解决了结构转变。总的来说,这项工作为基于锌的zif提供了一个可转移的、dft精确的机器学习力场。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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