{"title":"Efficient Tensorized Evaluation of Permutation Invariant Polynomials for Representing Potential Energy Surfaces","authors":"Junhong Li, Kaisheng Song, Hua Guo, Jun Li","doi":"10.1021/acs.jctc.6c01659","DOIUrl":null,"url":null,"abstract":"<p>Permutation invariant polynomials (PIPs), together with\r\nrelated\r\npolynomial-based invariant descriptors such as fundamental invariants\r\n(FIs), are widely used in constructing high-fidelity global potential\r\nenergy surfaces (PESs) of molecules that contain identical atoms.\r\nAlthough the monomial symmetrization approach (MSA) enables fast evaluation\r\nof PIPs through recursive factorization, it leads to deeply nested\r\ncomputational graphs that may require large memory and are inefficient\r\nin modern automatic differentiation frameworks. In this work, we introduce\r\nJaxPIP, a JAX-based implementation that reformulates PIP/FI evaluation\r\ninto tensorized linear algebra operations. By replacing recursive\r\nfactorization with dense matrix operations combined with log-exp transformation\r\nand segmented summation, the evaluation becomes regular and GPU-friendly.\r\nThis allows efficient execution with just-in-time compilation and\r\nenables large-scale batch evaluation of energies and forces (as well\r\nas higher-order derivatives). The resulting architecture supports\r\nensemble simulations such as quasi-classical trajectory (QCT), path-integral\r\nmolecular dynamics (PIMD), and diffusion Monte Carlo (DMC) in a fully\r\nvectorized manner. As demonstrated in examples, JaxPIP provides a\r\npractical route for efficient simulations of molecular systems with\r\nscalable GPU execution.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"22 19","pages":"9940–9953"},"PeriodicalIF":5.8000,"publicationDate":"2026-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jctc.6c01659","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/9/30 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Permutation invariant polynomials (PIPs), together with
related
polynomial-based invariant descriptors such as fundamental invariants
(FIs), are widely used in constructing high-fidelity global potential
energy surfaces (PESs) of molecules that contain identical atoms.
Although the monomial symmetrization approach (MSA) enables fast evaluation
of PIPs through recursive factorization, it leads to deeply nested
computational graphs that may require large memory and are inefficient
in modern automatic differentiation frameworks. In this work, we introduce
JaxPIP, a JAX-based implementation that reformulates PIP/FI evaluation
into tensorized linear algebra operations. By replacing recursive
factorization with dense matrix operations combined with log-exp transformation
and segmented summation, the evaluation becomes regular and GPU-friendly.
This allows efficient execution with just-in-time compilation and
enables large-scale batch evaluation of energies and forces (as well
as higher-order derivatives). The resulting architecture supports
ensemble simulations such as quasi-classical trajectory (QCT), path-integral
molecular dynamics (PIMD), and diffusion Monte Carlo (DMC) in a fully
vectorized manner. As demonstrated in examples, JaxPIP provides a
practical route for efficient simulations of molecular systems with
scalable GPU execution.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.