Development of Conventional, Real-Time, and Ultrafast Real-Time PCR Assays for the Accurate Identification of Ibacus Novemdentatus (Smooth Fan Lobster)

IF 3 3区 农林科学 Q2 FOOD SCIENCE & TECHNOLOGY
Ji Seok Yi, Ho Soo Lim, Moon Ik Chang
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引用次数: 0

Abstract

This study developed three DNA-based PCR assays targeting the cytochrome c oxidase subunit I (COI) mitochondrial gene to identify Ibacus novemdentatus, a smooth fan lobster. Conventional PCR and real-time PCR (RT-PCR) assay exhibited specificity for the smooth fan lobster, with no cross-reactivity with eight non-target species. The assays were further refined to develop an ultrafast RT-PCR assay capable of detecting smooth fan lobster within 30-min PCR reaction time. The specificity, sensitivity, and false-positive and false-negative rates of the three assays complied with the CODEX and US FDA guidelines. We evaluated the applicability of these assays using 17 commercial products. Furthermore, direct lysis buffer (DLB)-based ultrafast RT-PCR has been confirmed as a useful assay for field applications. The three proposed assays are useful tools for accurate detection of smooth fan lobsters in food and have potential applications in the food industry.

常规、实时和超快实时荧光定量PCR方法对平扇龙虾(Ibacus Novemdentatus)准确鉴定的建立
本研究以细胞色素c氧化酶亚基I (COI)线粒体基因为目标,建立了3种基于dna的PCR方法,对光滑扇形龙虾(Ibacus novemdentatus)进行了鉴定。常规PCR和实时荧光定量PCR (RT-PCR)对扇虾具有特异性,与8个非靶种无交叉反应性。实验进一步完善,建立了一种超快速RT-PCR方法,能够在30分钟的PCR反应时间内检测到光滑扇形龙虾。这三种检测方法的特异性、敏感性以及假阳性和假阴性率均符合食品法典委员会和美国食品药品监督管理局的指南。我们使用17种商业产品评估了这些检测的适用性。此外,基于直接裂解缓冲液(DLB)的超快速RT-PCR已被证实是一种有用的现场应用检测方法。这三种检测方法是准确检测食品中扇形龙虾的有效工具,在食品工业中具有潜在的应用前景。
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来源期刊
Food Analytical Methods
Food Analytical Methods 农林科学-食品科技
CiteScore
6.00
自引率
3.40%
发文量
244
审稿时长
3.1 months
期刊介绍: Food Analytical Methods publishes original articles, review articles, and notes on novel and/or state-of-the-art analytical methods or issues to be solved, as well as significant improvements or interesting applications to existing methods. These include analytical technology and methodology for food microbial contaminants, food chemistry and toxicology, food quality, food authenticity and food traceability. The journal covers fundamental and specific aspects of the development, optimization, and practical implementation in routine laboratories, and validation of food analytical methods for the monitoring of food safety and quality.
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