DASHING-LSCI: deep learning-based anatomical multiclass segmentation for human intraoperative neurosurgical guidance - laser speckle contrast imaging.

IF 3.2 2区 医学 Q2 BIOCHEMICAL RESEARCH METHODS
Ebenezer Raj Selvaraj Mercyshalinie, Paul Calle, Jacqueline O Stovall, Brayden J Girard, Diogo Pinheiro Cordeiro, Andrew M Bauer, Johannes Goldberg, Christopher S Graffeo, Andreas Raabe, Michael T Lawton, Andrew K Dunn, Chongle Pan, David R Miller
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Abstract

Laser speckle contrast imaging (LSCI) provides real-time, label-free visualization of cerebral blood flow in vessels and perfusion in cortical tissue during neurosurgery. At present, surgeons interpret LSCI-derived flow and perfusion changes qualitatively between microsurgical maneuvers, which limits continuous quantitative analysis. Automated delineation of blood vessels and cortical tissue is a prerequisite for such analysis. Here we evaluate a deep learning approach for multiclass segmentation of intraoperative LSCI images into blood vessels, cortical tissue, and background (e.g., surgical instruments, skull). We curated 90 intraoperative LSCI images acquired during 18 unique human neurosurgery procedures across three prospective observational clinical studies (30 images per site) and trained nnU-Net (Version 2) to segment images. To assess cross-site generalization, one site was reserved exclusively for testing while the images from the other two were pooled and split into training and validation sets. Across three held-out sites, the model achieved mean Dice scores of 0.88 for background and 0.73 for cortical tissue, but a lower and more variable 0.41 for blood vessels, reflecting the difficulty of segmenting thin, sparse vessel structures. These results demonstrate the feasibility of deep-learning segmentation for extracting anatomical structure from neurosurgical LSCI images, a capability needed for real-time, continuous blood flow and perfusion analysis to support surgical guidance.

dash - lsci:基于深度学习的人体术中神经外科引导解剖多类分割-激光散斑对比成像。
激光散斑对比成像(LSCI)在神经外科手术中提供实时、无标记的脑血管血流和皮质组织灌注的可视化。目前,外科医生定性地解释显微外科操作之间lsci衍生的血流和灌注变化,这限制了连续的定量分析。血管和皮质组织的自动描绘是这种分析的先决条件。在这里,我们评估了一种深度学习方法,用于将术中LSCI图像分割成血管、皮质组织和背景(如手术器械、颅骨)。我们整理了3个前瞻性观察性临床研究中18个独特的人类神经外科手术过程中获得的90张术中LSCI图像(每个部位30张图像),并训练了nnU-Net (Version 2)来分割图像。为了评估跨站点的泛化,一个站点专门用于测试,而来自其他两个站点的图像被合并并分成训练集和验证集。在三个被遮挡的部位,该模型的背景和皮质组织的平均Dice得分分别为0.88和0.73,但血管的平均Dice得分较低且变化较大,为0.41,这反映了分割薄而稀疏的血管结构的难度。这些结果证明了从神经外科LSCI图像中提取解剖结构的深度学习分割的可行性,这是实时、连续的血流和灌注分析所需的能力,以支持手术指导。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Biomedical optics express
Biomedical optics express BIOCHEMICAL RESEARCH METHODS-OPTICS
CiteScore
6.80
自引率
11.80%
发文量
633
审稿时长
1 months
期刊介绍: The journal''s scope encompasses fundamental research, technology development, biomedical studies and clinical applications. BOEx focuses on the leading edge topics in the field, including: Tissue optics and spectroscopy Novel microscopies Optical coherence tomography Diffuse and fluorescence tomography Photoacoustic and multimodal imaging Molecular imaging and therapies Nanophotonic biosensing Optical biophysics/photobiology Microfluidic optical devices Vision research.
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