Advances in erythritol production through synthetic biology and systems metabolic engineering

IF 3.4 3区 生物学 Q3 MICROBIOLOGY
Yan Zhang, Shuo Xia, Yuefan Zhang, Jung-Kul Lee, Vipin Chandra Kalia, Hongtao Bi, Chunjie Gong
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引用次数: 0

Abstract

Synthetic biology has delivered a toolkit for erythritol production, yet a metabolic trade-off persists: strict dependence on pentose phosphate flux and NADPH regeneration pits product synthesis against cell growth and stress adaptation, rendering most engineering interventions unable to break the yield–productivity trade-off. This Review frames erythritol biomanufacturing within a hierarchical constraint cascade, tracing the progression from native strain optimization through synthetic biology-driven pathway rewiring, cofactor balancing, modular design, to AI-integrated design-build-test-learn (DBTL) cycles. Carbon precursor supply sets the flux ceiling, cofactor availability modulates conversion, and scale-dependent heterogeneities in mixing and feedstocks widen the gap between laboratory design and industrial operation. Comparison with other rare sugars (allulose, tagatose) reveals erythritol’s unique challenges: deep pathway embedding and high reducing-power demand. While accelerating enzyme engineering, metabolic modelling and process control, current AI applications are most likely to succeed when coupled with mechanism-based, cross-scale models, rather than merely statistical fits. The next breakthrough lies in closing the loop between real-time sensing and adaptive flux regulation. This vision could be realized through integrated biomanufacturing platforms that combine mechanistic modeling, automated DBTL cycles, and cell-free systems where cellular constraints prove limiting. This Review offers a unified, scale-spanning framework for diagnosing systemic bottlenecks in erythritol biosynthesis and outlines principles for intelligent biomanufacturing of sugar alcohols.

Graphical abstract

合成生物学和系统代谢工程在赤藓糖醇生产方面的研究进展。
合成生物学已经为赤藓糖醇的生产提供了一个工具包,但代谢权衡仍然存在:严格依赖戊糖磷酸通量和NADPH再生使产品合成与细胞生长和应激适应相矛盾,使得大多数工程干预无法打破产量-生产力的权衡。这篇综述将赤藓糖醇生物制造框架在一个层次约束级联中,追踪从天然菌株优化到合成生物学驱动的通路重新布线、辅因子平衡、模块化设计,再到人工智能集成的设计-构建-测试-学习(DBTL)周期的进展。碳前驱体供应设定通量上限,辅因子可用性调节转化,混合和原料的规模依赖性异质性扩大了实验室设计和工业操作之间的差距。与其他稀有糖(allulose, tagatose)的比较揭示了赤藓糖醇的独特挑战:深通路嵌入和高还原功率需求。在加速酶工程、代谢建模和过程控制的同时,当前的人工智能应用最有可能在与基于机制的跨尺度模型相结合时取得成功,而不仅仅是统计拟合。下一个突破在于闭合实时传感和自适应通量调节之间的回路。这一愿景可以通过集成的生物制造平台来实现,该平台结合了机械建模、自动化DBTL周期和无细胞系统,其中细胞约束被证明是有限的。本综述为诊断赤藓糖醇生物合成的系统性瓶颈提供了一个统一的、跨越规模的框架,并概述了糖醇智能生物制造的原则。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Archives of Microbiology
Archives of Microbiology 生物-微生物学
CiteScore
4.90
自引率
3.60%
发文量
601
审稿时长
3 months
期刊介绍: Research papers must make a significant and original contribution to microbiology and be of interest to a broad readership. The results of any experimental approach that meets these objectives are welcome, particularly biochemical, molecular genetic, physiological, and/or physical investigations into microbial cells and their interactions with their environments, including their eukaryotic hosts. Mini-reviews in areas of special topical interest and papers on medical microbiology, ecology and systematics, including description of novel taxa, are also published. Theoretical papers and those that report on the analysis or ''mining'' of data are acceptable in principle if new information, interpretations, or hypotheses emerge.
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