Molecular Communication Channel as a Physical Reservoir Computer

IF 4.8 2区 计算机科学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Mustafa Uzun;Kaan Burak Ikiz;Murat Kuscu
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引用次数: 0

Abstract

Molecular Communication (MC) channels are characterized by significant memory and nonlinear dynamics arising from diffusion and receptor kinetics. While these properties are often treated as impairments to reliable data transmission, this work investigates whether they can instead be exploited as computational resources. We frame a canonical point-to-point MC channel, comprising ligand diffusion and reversible ligand–receptor binding at a spherical receiver, as a Physical Reservoir Computer (PRC). Using deterministic mean-field modeling and particle-based spatial stochastic simulations, we evaluate the MC system’s capability for temporal information processing on standard chaotic time-series benchmarks. Performance is characterized using both task-specific Normalized Root Mean Square Error (NRMSE) and the task-independent Information Processing Capacity (IPC). Our results reveal a non-monotonic dependence of computational capability on key biophysical parameters, including receptor kinetic rates, diffusion coefficient, and transmitter–receiver distance, identifying operating regimes where memory and nonlinearity are balanced. These findings demonstrate the potential of the MC channel as a biologically compatible computational substrate and provide initial design guidelines pointing toward MC networks that co-locate sensing, communication, and computation.
分子通信信道作为物理存储计算机
分子通信(MC)通道具有显著的记忆和由扩散和受体动力学引起的非线性动力学。虽然这些属性通常被视为对可靠数据传输的损害,但这项工作调查了它们是否可以被利用为计算资源。我们构建了一个典型的点对点MC通道,包括配体扩散和配体-受体在球形接收器上的可逆结合,作为物理水库计算机(PRC)。利用确定性平均场模型和基于粒子的空间随机模拟,我们在标准混沌时间序列基准上评估了MC系统处理时间信息的能力。性能使用特定于任务的标准化均方根误差(NRMSE)和独立于任务的信息处理能力(IPC)来表征。我们的研究结果揭示了计算能力对关键生物物理参数(包括受体动力学速率、扩散系数和收发距离)的非单调依赖,从而确定了记忆和非线性平衡的操作机制。这些发现证明了MC通道作为生物兼容计算基板的潜力,并提供了指向MC网络的初始设计指南,该网络可以同时定位传感、通信和计算。
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来源期刊
IEEE Transactions on Emerging Topics in Computing
IEEE Transactions on Emerging Topics in Computing Computer Science-Computer Science (miscellaneous)
CiteScore
12.10
自引率
5.10%
发文量
113
期刊介绍: IEEE Transactions on Emerging Topics in Computing publishes papers on emerging aspects of computer science, computing technology, and computing applications not currently covered by other IEEE Computer Society Transactions. Some examples of emerging topics in computing include: IT for Green, Synthetic and organic computing structures and systems, Advanced analytics, Social/occupational computing, Location-based/client computer systems, Morphic computer design, Electronic game systems, & Health-care IT.
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