Identification of hypertension-associated bacterial key genes as potential targets and therapeutic agents through integrated bioinformatics approach.

IF 2.9 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Most Shermin Akter Sumi, Md Tahalil Islam Rahat, Most Nusrat Jahan Resma, Md Feroj Ahmed, Md Nurul Haque Mollah, Md Kaderi Kibria
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引用次数: 0

Abstract

Hypertension (HTN) is a major global health burden and a leading risk factor for cardiovascular morbidity and mortality. Although numerous studies have explored host genetic factors and molecular mechanisms underlying HTN, increasing evidence indicates that gut microbiota dysbiosis also contributes to disease development. However, the specific microbial genes involved in HTN pathogenesis and their potential therapeutic targeting remain largely unexplored. This study aimed to identify HTN-associated differentially abundant bacterial genes (DAGs), prioritize bacterial key genes (bKGs) from among them, and repurpose potential therapeutic agents targeting these bKGs using an integrated bioinformatics framework. A total of 167 stool (fecal) microbiome samples, comprising 72 samples from HTN patients and 95 samples from HCs, were analyzed using publicly available 16 S rRNA sequencing data. After quality processing and clustering at 97% similarity, 95,361 representative operational taxonomic units were obtained. Microbial diversity analysis revealed significant alterations in community composition between HTN and HC groups. Differential abundance analysis identified 24 significantly altered bacterial genera associated with HTN. Functional prediction analysis further revealed 28 differentially abundant metabolic pathways and 631 differentially abundant bacterial genes (DAGs) potentially involved in HTN pathogenesis. From these DAGs, protein-protein interaction network analysis prioritized ten hub genes as bKGs (alsB, ampC, gsiB, araC, coaA, dnaB, fruA, ssuA, minE and tsx) representing potential microbial therapeutic targets. Structure-based molecular docking identified five approved drugs, namely Azilsartan, Eplerenone, Candesartan, Conivaptan, and Telmisartan, as top-ranked compounds exhibiting strong binding affinities toward the proposed targets. ADMET evaluation suggested favorable pharmacokinetic and safety profiles for Azilsartan, Eplerenone, and Candesartan. Furthermore, molecular dynamics simulation analyses confirmed that Eplerenone and Candesartan exhibited greater structural stability and sustained binding interactions, suggesting their potential as promising therapeutic candidates for HTN management. Therefore, this study identifies microbial gene signatures potentially involved in HTN and proposes a microbiome-guided drug repurposing strategy targeting bacterial functional pathways. These findings provide novel insights into microbiota-host interactions in HTN and highlight promising therapeutic candidates that warrant further experimental and clinical validation.

利用综合生物信息学方法鉴定高血压相关细菌关键基因作为潜在靶点和治疗剂。
高血压(HTN)是全球主要的健康负担,也是心血管疾病发病率和死亡率的主要危险因素。尽管许多研究已经探索了HTN的宿主遗传因素和分子机制,但越来越多的证据表明,肠道微生物群失调也有助于疾病的发展。然而,参与HTN发病机制的特定微生物基因及其潜在的治疗靶点在很大程度上仍未被探索。本研究旨在鉴定htn相关的差异丰度细菌基因(DAGs),利用综合生物信息学框架确定细菌关键基因(bKGs)的优先级,并利用潜在的治疗药物靶向这些bKGs。使用公开的16s rRNA测序数据,共分析了167份粪便微生物组样本,其中72份来自HTN患者,95份来自hcc。经过质量处理和97%相似度聚类,得到95,361个具有代表性的操作分类单位。微生物多样性分析显示,HTN组和HC组的群落组成存在显著差异。差异丰度分析鉴定出24个与HTN相关的显著改变的细菌属。功能预测分析进一步揭示了28个差异丰富的代谢途径和631个差异丰富的细菌基因(dag)可能参与HTN的发病机制。从这些dag中,蛋白相互作用网络分析优选出10个枢纽基因作为bKGs (alsB、ampC、gsiB、araC、coaA、dnaB、fruA、ssuA、minE和tsx),代表潜在的微生物治疗靶点。基于结构的分子对接确定了5种已批准的药物,即阿兹沙坦、埃普利酮、坎地沙坦、康尼伐坦和替米沙坦,它们是对拟议靶点具有强结合亲和力的排名靠前的化合物。ADMET评价显示阿兹沙坦、依普利酮和坎地沙坦具有良好的药代动力学和安全性。此外,分子动力学模拟分析证实,Eplerenone和坎地沙坦表现出更大的结构稳定性和持续的结合相互作用,表明它们有潜力成为HTN治疗的有希望的候选药物。因此,本研究确定了可能参与HTN的微生物基因特征,并提出了一种针对细菌功能途径的微生物组引导药物再利用策略。这些发现为HTN中微生物-宿主相互作用提供了新的见解,并突出了有希望的治疗候选药物,值得进一步的实验和临床验证。
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来源期刊
International Microbiology
International Microbiology 生物-生物工程与应用微生物
CiteScore
5.50
自引率
3.20%
发文量
67
审稿时长
3 months
期刊介绍: International Microbiology publishes information on basic and applied microbiology for a worldwide readership. The journal publishes articles and short reviews based on original research, articles about microbiologists and their work and questions related to the history and sociology of this science. Also offered are perspectives, opinion, book reviews and editorials. A distinguishing feature of International Microbiology is its broadening of the term microbiology to include eukaryotic microorganisms.
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