Integrated Bioinformatic and Experimental Analysis Reveals the Molecular Mechanisms Underlying KDM1B/LSD2 Inhibition as a Therapeutic Strategy in Human Lung Adenocarcinoma

IF 3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Kayalvizhi Samuvel Muthiah, Sathan Raj Natarajan, Udesh Dhawan, Yu-Chien Lin, Ren-Jei Chung
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引用次数: 0

Abstract

Lung cancer remains a major global health challenge, and the oncogenic function of KDM1B (Lysine-specific Demethylase 1B) is still poorly characterized. This study employed integrated bioinformatics and experimental approaches to investigate KDM1B's function in lung cancer. Pan-cancer analysis using databases such as TIMER revealed notably elevated KDM1B mRNA expression in LUAD datasets, suggesting its potential as a diagnostic biomarker. A strong association was also found between increased KDM1B levels and immune cell infiltration in LUAD datasets. Protein interaction networks constructed using STRING and Cytoscape revealed close associations between KDM1B and key regulatory genes in NSCLC. KEGG enrichment analysis linked KDM1B to the mTOR signaling, which is critical for cell proliferation and survival. RT-PCR and western blotting for experimental validation showed KDM1B expression was significantly increased in A549 and NCI-H460 lung cancer cells. The deletion of KDM1B inhibits cell growth, induces G0/G1 phase cell cycle arrest, and promotes apoptosis in A54 cells. Moreover, cell proliferation was significantly inhibited by the KDM1B inhibitor, tranylcypromine, and induced G0/G1 phase cell cycle arrest, increased apoptosis, ROS, and glycolytic activity in A549 cells. Collectively, these findings highlight KDM1B as a valuable therapeutic target in lung adenocarcinoma and emphasize its key role in lung cancer development.

综合生物信息学和实验分析揭示了KDM1B/LSD2抑制作为人肺腺癌治疗策略的分子机制。
肺癌仍然是一个主要的全球健康挑战,而KDM1B(赖氨酸特异性去甲基酶1B)的致癌功能仍然知之甚少。本研究采用生物信息学和实验相结合的方法研究KDM1B在肺癌中的功能。使用TIMER等数据库进行的泛癌症分析显示,LUAD数据集中KDM1B mRNA的表达显著升高,表明其具有作为诊断性生物标志物的潜力。在LUAD数据集中还发现KDM1B水平升高与免疫细胞浸润之间存在强烈关联。利用STRING和Cytoscape构建的蛋白相互作用网络揭示了KDM1B与NSCLC关键调控基因之间的密切关联。KEGG富集分析将KDM1B与mTOR信号联系起来,mTOR信号对细胞增殖和存活至关重要。RT-PCR和western blotting实验验证显示,KDM1B在A549和NCI-H460肺癌细胞中的表达显著升高。在A54细胞中,KDM1B缺失抑制细胞生长,诱导G0/G1期细胞周期阻滞,促进细胞凋亡。此外,KDM1B抑制剂tranyylcypromine显著抑制细胞增殖,诱导A549细胞G0/G1期细胞周期阻滞,增加凋亡、ROS和糖酵解活性。总的来说,这些发现突出了KDM1B作为肺腺癌的一个有价值的治疗靶点,并强调了它在肺癌发展中的关键作用。
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来源期刊
Journal of cellular biochemistry
Journal of cellular biochemistry 生物-生化与分子生物学
CiteScore
9.90
自引率
0.00%
发文量
164
审稿时长
1 months
期刊介绍: The Journal of Cellular Biochemistry publishes descriptions of original research in which complex cellular, pathogenic, clinical, or animal model systems are studied by biochemical, molecular, genetic, epigenetic or quantitative ultrastructural approaches. Submission of papers reporting genomic, proteomic, bioinformatics and systems biology approaches to identify and characterize parameters of biological control in a cellular context are encouraged. The areas covered include, but are not restricted to, conditions, agents, regulatory networks, or differentiation states that influence structure, cell cycle & growth control, structure-function relationships.
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