The mossing link: Building a trait-based database as a foundation for bryophyte integration in ecosystem models

IF 8.5 2区 环境科学与生态学 Q1 ECOLOGY
Ecological Informatics Pub Date : 2026-08-01 Epub Date: 2026-07-15 DOI:10.1016/j.ecoinf.2026.103935
Casey Schine, Robin Andresen, Alex Lyford, Benjamin N. Sulman, Sasha C. Reed, Kirsten K. Coe
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引用次数: 0

Abstract

Bryophytes—mosses, liverworts, and hornworts—play an important role in carbon storage, nutrient cycling, and hydrological processes across terrestrial ecosystems, yet they remain largely absent from the land surface components of Earth System Models (ESMs). Their exclusion limits the accuracy of terrestrial biosphere simulations, particularly in high-latitude and moisture-limited regions where bryophytes can dominate primary production and mediate critical biogeochemical fluxes. The Bryophyte Functional Integration for Terrestrial Ecosystem models (BryoFITE) project has been developed to address this omission. The objective of this study is to establish a systematic, reproducible workflow for synthesizing bryophyte trait data relevant to terrestrial ecosystem models. This workflow integrates automation with expert curation and relies on tools already widely used in ecological research. We identified relevant literature by constructing a comprehensive matrix of subject-parameter search terms. We then used these search terms to execute a total of 720 targeted searches across Google Scholar and Scopus, retrieving over 84,000 records. We applied a combination of fuzzy string matching and supervised machine learning to deduplicate and classify the resulting literature, yielding a refined group of ∼35,000 unique entries. A Random Forest model, trained on a manually flagged subset of records, excluded over 50% of records as unlikely to contain relevant data based on manual and model-based classification. The remaining records were ranked by likelihood of containing usable data, enabling us to prioritize data entry toward the literature with the highest probable value for this research. We then developed a modular, cloud-based database using Google Sheets with custom JavaScript automation for collaborative, flexible data entry. The BryoFITE database captures ecophysiological parameters, including photosynthetic capacity, desiccation tolerance, and nutrient-use traits, critical for modeling bryophyte function. Our preliminary results demonstrate the utility of this workflow for synthesizing heterogenous trait data and highlight its potential to accelerate the development of bryophyte-specific plant functional types for integration into land models, to advance our capacity to simulate plant–climate interactions in ESMs, and to use probability-based workflows for integrating diverse data for model parameterization, evaluation, and development.
苔藓链接:建立基于性状的数据库,为苔藓植物在生态系统模型中的整合奠定基础
苔藓、苔类植物和角苔类植物在陆地生态系统的碳储存、养分循环和水文过程中发挥着重要作用,但它们在地球系统模型(ESMs)的陆地表面组分中仍然基本缺失。它们的排除限制了陆地生物圈模拟的准确性,特别是在高纬度和湿度有限的地区,苔藓植物可以主导初级生产并调节临界生物地球化学通量。陆地生态系统模式苔藓植物功能整合(BryoFITE)项目就是为了解决这一问题而开发的。本研究的目的是建立一个系统的、可重复的工作流程来合成与陆地生态系统模型相关的苔藓植物性状数据。这个工作流程集成了自动化和专家管理,并依赖于已经在生态研究中广泛使用的工具。我们通过构建主题参数搜索词的综合矩阵来识别相关文献。然后,我们使用这些搜索词在b谷歌Scholar和Scopus上执行了总共720个目标搜索,检索了84,000多条记录。我们将模糊字符串匹配和监督机器学习相结合,对产生的文献进行去重复和分类,产生一个由~ 35,000个唯一条目组成的精细化组。随机森林模型在手动标记的记录子集上进行训练,排除了超过50%的记录,因为这些记录不太可能包含基于手动和基于模型的分类的相关数据。剩余的记录根据包含可用数据的可能性进行排序,使我们能够优先考虑对本研究最有可能价值的文献的数据输入。然后,我们使用谷歌Sheets和自定义JavaScript自动化开发了一个模块化的、基于云的数据库,用于协作、灵活的数据输入。BryoFITE数据库捕获生态生理参数,包括光合能力、干燥耐受性和营养利用特性,这些对苔藓植物功能建模至关重要。我们的初步结果证明了该工作流程在综合异质性性状数据方面的实用性,并强调了其在加速苔藓植物特定植物功能类型的发展以整合到陆地模型中的潜力,提高了我们在esm中模拟植物-气候相互作用的能力,并使用基于概率的工作流程来整合各种数据以进行模型参数化,评估和开发。
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来源期刊
Ecological Informatics
Ecological Informatics 环境科学-生态学
CiteScore
8.30
自引率
11.80%
发文量
346
审稿时长
46 days
期刊介绍: The journal Ecological Informatics is devoted to the publication of high quality, peer-reviewed articles on all aspects of computational ecology, data science and biogeography. The scope of the journal takes into account the data-intensive nature of ecology, the growing capacity of information technology to access, harness and leverage complex data as well as the critical need for informing sustainable management in view of global environmental and climate change. The nature of the journal is interdisciplinary at the crossover between ecology and informatics. It focuses on novel concepts and techniques for image- and genome-based monitoring and interpretation, sensor- and multimedia-based data acquisition, internet-based data archiving and sharing, data assimilation, modelling and prediction of ecological data.
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