Cyberinfrastructure to support ecological forecasting challenges

IF 3 3区 环境科学与生态学 Q2 ECOLOGY
Ecosphere Pub Date : 2026-06-10 DOI:10.1002/ecs2.70682
R. Quinn Thomas, Carl Boettiger
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引用次数: 0

Abstract

Ecological forecasting challenges, formalized efforts to empower the ecology community to develop near-term iterative forecasts of yet-to-be-collected data, are a powerful tool to advance predictive capacities in ecology. The National Ecological Observatory Network (NEON) Ecological Forecasting Challenge, which has processed over 82 million individual forecasts across 81 sites since 2021, exemplifies this approach. However, the cyberinfrastructure (CI) required to support such large-scale, community-driven forecasting efforts has not been fully described. Here, we present the design principles, technical implementation, and lessons learned from the CI developed for the NEON Challenge. This serverless, open-source platform automates key tasks, including target data generation, probabilistic forecast submission-processing, evaluation using proper scoring rules, and dissemination of results. The CI leverages cloud-native technologies, including Simple Storage Service (S3)-based storage, GitHub Actions, and Docker containers, to ensure scalability, reproducibility, and vendor-agnostic deployment. The CI also includes tools to reduce barriers for contributors, such as R packages for forecast submission, access to weather forecasts as model drivers, and tutorials. A dashboard and searchable catalog enhance transparency and accessibility. Our experience demonstrates that forecasting challenges can serve as focal points for community engagement, education, and synthesis. The modular design of the CI enables adaptation to new observatories and evolving technologies, providing a roadmap for future ecological forecasting efforts. By documenting this infrastructure, we aim to empower researchers to launch and sustain forecasting challenges that advance ecological understanding through prediction.

Abstract Image

支持生态预测挑战的网络基础设施
生态预测挑战是授权生态社区对尚未收集的数据进行近期迭代预测的正式努力,是提高生态学预测能力的有力工具。自2021年以来,国家生态观测站网络(NEON)生态预测挑战已经在81个站点处理了超过8200万个个人预测,这就是这种方法的例证。然而,支持这种大规模、社区驱动的预测工作所需的网络基础设施(CI)尚未得到充分描述。在这里,我们将介绍为NEON挑战赛开发的CI的设计原则、技术实现和经验教训。这个无服务器的开源平台自动化了关键任务,包括目标数据生成、概率预测提交处理、使用适当评分规则的评估以及结果的传播。CI利用云原生技术,包括基于简单存储服务(S3)的存储、GitHub Actions和Docker容器,以确保可伸缩性、可再现性和与供应商无关的部署。CI还包括减少贡献者障碍的工具,例如用于提交预报的R包、作为模型驱动程序访问天气预报以及教程。仪表板和可搜索的目录增强了透明度和可访问性。我们的经验表明,预测挑战可以作为社区参与、教育和综合的焦点。CI的模块化设计能够适应新的观测站和不断发展的技术,为未来的生态预报工作提供路线图。通过记录这一基础设施,我们的目标是使研究人员能够发起和维持预测挑战,通过预测推进生态理解。
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来源期刊
Ecosphere
Ecosphere ECOLOGY-
CiteScore
4.70
自引率
3.70%
发文量
378
审稿时长
15 weeks
期刊介绍: The scope of Ecosphere is as broad as the science of ecology itself. The journal welcomes submissions from all sub-disciplines of ecological science, as well as interdisciplinary studies relating to ecology. The journal''s goal is to provide a rapid-publication, online-only, open-access alternative to ESA''s other journals, while maintaining the rigorous standards of peer review for which ESA publications are renowned.
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