A generic, rapid and robust platform for personalized functional circuit-guided neuromodulation targeting.

IF 18.4 1区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Wei Zhang, Shenshen Li, Ning An, Jianting Huang, Feng Wang, Danhong Wang, Yuanxiang Lin, Hesheng Liu, Jianxun Ren
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引用次数: 0

Abstract

Neuromodulation approaches can target specific brain functional circuits to treat various brain disorders, and resting-state functional magnetic resonance imaging is increasingly being used to map functional circuits in individual patients for target localization. However, this strategy faces three major hurdles for clinical translation: time-intensive resting-state functional magnetic resonance imaging processing, insufficient robustness for clinical use and a lack of automated targeting solutions. Here we cover the use of a generic, rapid, robust and automated platform for personalized functional circuit-guided target planning across different neuromodulation techniques, termed Unified Platform for Neuromodulation with Individualized Target Estimation (UNITE). UNITE is computationally efficiency and robust and uses DeepPrep, a recently developed end-to-end preprocessing pipeline that achieves a tenfold speedup and improved robustness compared with state-of-the-art clinical pipeline. Using DeepPrep's preprocessed data, UNITE maps functional circuits and localizes personalized targets through automated targeting algorithms. Currently, UNITE offers three built-in transcranial magnetic stimulation-targeting algorithms for post-stroke functional rehabilitation and one focused ultrasound stimulation-targeting algorithm for Parkinson's disease. Notably, it is designed to be adapted for other brain disorders and neuromodulation applications. To ensure quality and usability, UNITE generates a data quality control report and a visual verification report of the identified targets, with target coordinates exported in multiple formats for compatibility with different neuronavigation systems. Overall, this platform enables personalized neuromodulation target localization within 30 min on a local graphics processing unit-equipped workstation. A basic level of computer science proficiency, along with neuroimaging experience, is sufficient for its use.

一个通用,快速和强大的平台,个性化功能电路引导神经调节靶向。
神经调节方法可以针对特定的脑功能回路来治疗各种脑疾病,静息状态功能磁共振成像越来越多地用于绘制个体患者的功能回路以定位目标。然而,该策略在临床转化中面临三大障碍:时间密集的静息状态功能磁共振成像处理,临床使用的鲁棒性不足以及缺乏自动化靶向解决方案。在这里,我们介绍了一个通用的、快速的、健壮的和自动化的平台,用于跨不同神经调节技术的个性化功能电路引导目标规划,称为具有个性化目标估计的神经调节统一平台(UNITE)。UNITE计算效率高,鲁棒性强,使用了DeepPrep,这是一种最近开发的端到端预处理管道,与最先进的临床管道相比,速度提高了十倍,鲁棒性也得到了提高。使用DeepPrep的预处理数据,UNITE绘制功能电路,并通过自动定位算法定位个性化目标。目前,UNITE为脑卒中后功能康复提供了三种内置经颅磁刺激靶向算法,为帕金森病提供了一种聚焦超声刺激靶向算法。值得注意的是,它的设计适用于其他脑部疾病和神经调节应用。为了确保质量和可用性,UNITE生成数据质量控制报告和识别目标的视觉验证报告,并以多种格式导出目标坐标,以兼容不同的神经导航系统。总体而言,该平台能够在配备本地图形处理单元的工作站上在30分钟内实现个性化神经调节目标定位。具备基本的计算机科学水平,以及神经成像经验,就足以使用它。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Nature Protocols
Nature Protocols 生物-生化研究方法
CiteScore
29.10
自引率
0.70%
发文量
128
审稿时长
4 months
期刊介绍: Nature Protocols focuses on publishing protocols used to address significant biological and biomedical science research questions, including methods grounded in physics and chemistry with practical applications to biological problems. The journal caters to a primary audience of research scientists and, as such, exclusively publishes protocols with research applications. Protocols primarily aimed at influencing patient management and treatment decisions are not featured. The specific techniques covered encompass a wide range, including but not limited to: Biochemistry, Cell biology, Cell culture, Chemical modification, Computational biology, Developmental biology, Epigenomics, Genetic analysis, Genetic modification, Genomics, Imaging, Immunology, Isolation, purification, and separation, Lipidomics, Metabolomics, Microbiology, Model organisms, Nanotechnology, Neuroscience, Nucleic-acid-based molecular biology, Pharmacology, Plant biology, Protein analysis, Proteomics, Spectroscopy, Structural biology, Synthetic chemistry, Tissue culture, Toxicology, and Virology.
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