Inferring the Chemotaxis Distortion Function From Cellular Decision Strategies

IF 2.5 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Fardad Vakilipoor;Johannes Konrad;Maximilian Schäfer
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引用次数: 0

Abstract

Cellular intelligence allows cells to process environmental signals and make context-dependent decisions. This is clearly seen in chemotaxis, where cells navigate chemical gradients despite noisy signaling pathways. To investigate how cells deal with uncertainty, an information-theoretic framework based on rate-distortion theory (RDT) is applied. The Blahut-Arimoto algorithm (BAA) computes optimal decision strategies that minimize mutual information while satisfying distortion constraints, balancing sensing accuracy with distortion constraint equivalent to resource cost. The inverse Blahut-Arimoto algorithm (IBAA) is proposed to compute the distortion function, which quantifies the system’s decision-making criteria for realizing a decision strategy to map input signals to outputs. This general framework extends beyond chemotaxis to biological and engineered systems requiring efficient information processing under uncertainty. The proposed IBAA is validated by estimating theoretical distortion functions in a binary decision scenario, which is similar to apoptosis. Additionally, using the local excitation global inhibition (LEGI) model to simulate chemotactic responses, the distortion function from the cell’s perspective is computed. The finding reveals that the decision criterion, i.e., the distortion function, of the cell in chemotaxis processes is fixed regardless of the cell’s state. This observation is analogous to any system view where the decision criterion is fixed while the optimal decision strategy can vary based on the environmental conditions.
从细胞决策策略推断趋化畸变函数
细胞智能允许细胞处理环境信号并做出与环境相关的决定。这在趋化性中可以清楚地看到,细胞在嘈杂的信号通路中导航化学梯度。为了研究细胞如何处理不确定性,应用了基于率失真理论(RDT)的信息理论框架。Blahut-Arimoto算法(BAA)计算最优决策策略,在满足畸变约束的同时最小化互信息,平衡感知精度和相当于资源成本的畸变约束。提出了逆Blahut-Arimoto算法(IBAA)来计算失真函数,该函数量化了系统实现将输入信号映射到输出的决策策略的决策准则。这一总体框架超越了趋化性,扩展到了需要在不确定性下进行有效信息处理的生物和工程系统。提出的IBAA通过估计二元决策场景(类似于细胞凋亡)中的理论扭曲函数来验证。此外,利用局部激发全局抑制(LEGI)模型模拟趋化反应,从细胞角度计算畸变函数。这一发现表明,无论细胞的状态如何,趋化过程中细胞的决策标准,即扭曲函数是固定的。这种观察类似于任何系统视图,其中决策标准是固定的,而最优决策策略可以根据环境条件而变化。
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来源期刊
CiteScore
3.90
自引率
13.60%
发文量
23
期刊介绍: As a result of recent advances in MEMS/NEMS and systems biology, as well as the emergence of synthetic bacteria and lab/process-on-a-chip techniques, it is now possible to design chemical “circuits”, custom organisms, micro/nanoscale swarms of devices, and a host of other new systems. This success opens up a new frontier for interdisciplinary communications techniques using chemistry, biology, and other principles that have not been considered in the communications literature. The IEEE Transactions on Molecular, Biological, and Multi-Scale Communications (T-MBMSC) is devoted to the principles, design, and analysis of communication systems that use physics beyond classical electromagnetism. This includes molecular, quantum, and other physical, chemical and biological techniques; as well as new communication techniques at small scales or across multiple scales (e.g., nano to micro to macro; note that strictly nanoscale systems, 1-100 nm, are outside the scope of this journal). Original research articles on one or more of the following topics are within scope: mathematical modeling, information/communication and network theoretic analysis, standardization and industrial applications, and analytical or experimental studies on communication processes or networks in biology. Contributions on related topics may also be considered for publication. Contributions from researchers outside the IEEE’s typical audience are encouraged.
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