Construction of a Diagnostic Model and Drug Prediction for Postischemic Stroke Cognitive Impairment Based on Machine Learning Screening of Lactate Metabolism- and Pyroptosis-Related Genes.

IF 3.7 2区 医学 Q2 GENETICS & HEREDITY
Human Mutation Pub Date : 2026-05-06 eCollection Date: 2026-01-01 DOI:10.1155/humu/2963117
Shulong Ge, Qiying Zhang, Ning Liu, Xueyan Zheng, Han Xu, Li Zhang
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引用次数: 0

Abstract

Reliable molecular biomarkers for poststroke cognitive impairment (PSCI) remain limited. Using publicly available bulk transcriptomic and single-cell RNA-seq datasets from GEO, we investigated lactate metabolism- and pyroptosis-related signatures and developed a diagnostic model. Differential expression analysis, KEGG pathway enrichment, and weighted gene coexpression network analysis (WGCNA) were performed, followed by multialgorithm feature selection (LASSO, SVM-RFE, and random forest). A logistic regression classifier was trained in the discovery cohort and externally validated in an independent cohort. Glycolysis/lactate metabolism, HIF-1 signaling, and NOD-like receptor-related pathways were enriched in PSCI-associated samples, and key coexpression modules were strongly correlated with ischemic injury traits. Cross-model consensus identified LDHA, GSDMD, and CASP1 as hub genes, yielding an AUC of 0.912 (95% bootstrap CI: 0.841-0.983) in the training cohort and 0.885 (95% bootstrap CI: 0.798-0.972) in the validation cohort. Immune deconvolution and scRNA-seq validation suggested increased proinflammatory microglia-associated signals, with relatively higher LDHA expression in microglia than in neurons; cell-cell communication analysis highlighted inflammatory interactions including IL1B-IL1R1. Connectivity map (CMap) analysis nominated candidate compounds, and molecular docking predicted favorable binding between oxamate and LDHA (binding energy = -9.5 kcal/mol). Collectively, these findings propose a compact LDHA/GSDMD/CASP1 biomarker panel for PSCI diagnosis and provide hypothesis-generating therapeutic leads that warrant further experimental validation.

基于机器学习筛选乳酸代谢和焦氧相关基因的脑卒中后认知功能障碍诊断模型构建及药物预测
卒中后认知障碍(PSCI)可靠的分子生物标志物仍然有限。利用GEO公开的大量转录组学和单细胞RNA-seq数据集,我们研究了乳酸代谢和热解相关的特征,并开发了一个诊断模型。进行差异表达分析、KEGG通路富集和加权基因共表达网络分析(WGCNA),然后进行多算法特征选择(LASSO、SVM-RFE和随机森林)。在发现队列中训练逻辑回归分类器,并在独立队列中进行外部验证。psci相关样本中糖酵解/乳酸代谢、HIF-1信号传导和nod样受体相关通路丰富,关键共表达模块与缺血性损伤性状密切相关。跨模型一致确定LDHA、GSDMD和CASP1为枢纽基因,训练组的AUC为0.912(95%自助CI: 0.841-0.983),验证组的AUC为0.885(95%自助CI: 0.798-0.972)。免疫反褶积和scRNA-seq验证提示促炎小胶质细胞相关信号增加,小胶质细胞中的LDHA表达相对高于神经元;细胞-细胞通讯分析强调炎症相互作用,包括IL1B-IL1R1。连接图(CMap)分析提名候选化合物,分子对接预测了草酸酯与LDHA的良好结合(结合能= -9.5 kcal/mol)。总的来说,这些发现提出了一个紧凑的LDHA/GSDMD/CASP1生物标志物小组,用于PSCI诊断,并提供了假设生成的治疗线索,需要进一步的实验验证。
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来源期刊
Human Mutation
Human Mutation 医学-遗传学
CiteScore
8.40
自引率
5.10%
发文量
190
审稿时长
2 months
期刊介绍: Human Mutation is a peer-reviewed journal that offers publication of original Research Articles, Methods, Mutation Updates, Reviews, Database Articles, Rapid Communications, and Letters on broad aspects of mutation research in humans. Reports of novel DNA variations and their phenotypic consequences, reports of SNPs demonstrated as valuable for genomic analysis, descriptions of new molecular detection methods, and novel approaches to clinical diagnosis are welcomed. Novel reports of gene organization at the genomic level, reported in the context of mutation investigation, may be considered. The journal provides a unique forum for the exchange of ideas, methods, and applications of interest to molecular, human, and medical geneticists in academic, industrial, and clinical research settings worldwide.
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