The Complete Mitochondrial Genome of a Newly Recorded Chinese Species of Diglyphus sabulosus (Hymenoptera: Eulophidae) and Insights into Its Phylogenetic Position.

IF 1.6 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Lu-Chao Fang, Zhi-Qiang Ge, Ou-Yan Xi, Ze-Lu Mu, Hong-Ying Hu
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引用次数: 0

Abstract

Diglyphus Walker, 1844 is an economically important genus which many species acting as biocontrol agents against agromyzid leafminer pests, but there is a lack of mitogenomic data on the evolutionary relationships within this genus, hindering a comprehensive understanding of its evolutionary history. We used traditional morphological methods to identify species, and present the first complete mitochondrial genome sequence and characterization of features of Diglyphus sabulosus and further infer its phylogenetic position based on the amino acid sequences of 13 protein-coding genes (PCGs). The complete mitochondrial genome of D. sabulosus is 15,690 bp in length, including 13 PCGs, 22 transfer RNA genes, 2 ribosomal RNA genes and a control region. The AT content of the whole genome sequence was 81.0%, indicating a significant AT bias. All protein-coding genes have the typical ATN as the start codon and TAA as the stop codon. Phylogenetic analysis inferred from the amino acid sequences of 13 PCGs revealed that all species within the family Eulophidae constituted a monophyletic clade, supporting the monophyly of this family. D. sabulosus and D. poppoea form a well-supported sister group, representing the species with the closest phylogenetic relationship within the analyzed taxa. In this study, the mitogenome structure was analyzed and the taxonomic status of D. sabulosus was clarified, thus providing a theoretical basis for understanding the phylogenetic relationships of Diglyphus.

中国新记录一种sabulosus Diglyphus(膜翅目:蜂科)线粒体全基因组及其系统发育地位的研究。
Diglyphus Walker, 1844是一个具有重要经济意义的属,许多种作为防治农螨叶螨害虫的生物防治剂,但缺乏关于该属内进化关系的丝分裂基因组学数据,阻碍了对其进化史的全面认识。利用传统形态学方法对物种进行鉴定,首次获得了sabulosus Diglyphus线粒体全基因组序列和特征,并根据13个蛋白质编码基因(PCGs)的氨基酸序列进一步推断其系统发育位置。sabulosus线粒体全基因组全长15690 bp,包括13个PCGs、22个转移RNA基因、2个核糖体RNA基因和1个控制区。全基因组序列AT含量为81.0%,存在显著AT偏倚。所有的蛋白质编码基因都以典型的ATN为起始密码子,TAA为终止密码子。根据13个PCGs的氨基酸序列进行系统发育分析,发现Eulophidae科所有物种均为单系进化支,支持该科的单系性。D. sabulosus和D. poppoea形成了一个支持良好的姐妹类群,代表了所分析分类群中系统发育关系最密切的物种。本研究分析了D. sabulosus的有丝分裂基因组结构,明确了其分类地位,为了解Diglyphus的系统发育关系提供了理论依据。
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来源期刊
Biochemical Genetics
Biochemical Genetics 生物-生化与分子生物学
CiteScore
3.90
自引率
0.00%
发文量
133
审稿时长
4.8 months
期刊介绍: Biochemical Genetics welcomes original manuscripts that address and test clear scientific hypotheses, are directed to a broad scientific audience, and clearly contribute to the advancement of the field through the use of sound sampling or experimental design, reliable analytical methodologies and robust statistical analyses. Although studies focusing on particular regions and target organisms are welcome, it is not the journal’s goal to publish essentially descriptive studies that provide results with narrow applicability, or are based on very small samples or pseudoreplication. Rather, Biochemical Genetics welcomes review articles that go beyond summarizing previous publications and create added value through the systematic analysis and critique of the current state of knowledge or by conducting meta-analyses. Methodological articles are also within the scope of Biological Genetics, particularly when new laboratory techniques or computational approaches are fully described and thoroughly compared with the existing benchmark methods. Biochemical Genetics welcomes articles on the following topics: Genomics; Proteomics; Population genetics; Phylogenetics; Metagenomics; Microbial genetics; Genetics and evolution of wild and cultivated plants; Animal genetics and evolution; Human genetics and evolution; Genetic disorders; Genetic markers of diseases; Gene technology and therapy; Experimental and analytical methods; Statistical and computational methods.
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