Diffusion of Carbamazepine in Hydrophobic Zeolites: A Comparative Study Using Classical and Machine-Learned Potentials.

IF 3.7 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Jakob Brauer, Richard Kendra, Carlos Bornes, Lukáš Grajciar, Michael Fischer
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Abstract

Hydrophobic zeolites are promising adsorbents for the persistent pollutant carbamazepine (CBZ), yet diffusion within their confining pores remains poorly understood. Computational studies often rely on static interaction energies, conveying only a static picture. We employ umbrella sampling simulations to obtain free energy surfaces (FES) of CBZ diffusion in a range of all-silica zeolites. Results from a classical force field description are compared with a fine-tuned neural network potential (MACE). While both methods show qualitative agreement, the MACE potential mostly predicts higher activation barriers, which we attribute to the more accurate representation of the energy penalty of close atomic contacts at the transition states. MACE simulations show that CBZ can become kinetically trapped in higher-energy, metastable orientations after a transition state. We propose that exergonic adsorption from an aqueous phase would populate an ensemble of lowest-energy and metastable states, providing a plausible kinetic pathway for diffusion, with a lowering of the effective activation barrier with respect to higher-energy states. The diffusion of CBZ is governed by a complex landscape of translational and rotational barriers, a picture only accessible by going beyond an interaction energy-based description. This work supports the rational choice of shape-selective zeolites as effective adsorbents for environmental remediation.

卡马西平在疏水性沸石中的扩散:经典电位和机器学习电位的比较研究。
疏水性沸石是持久性污染物卡马西平(CBZ)的有前途的吸附剂,但在其限制孔内的扩散仍然知之甚少。计算研究通常依赖于静态相互作用能,只传递静态图像。我们采用伞形采样模拟获得了一系列全硅沸石中CBZ扩散的自由能面(FES)。将经典力场描述结果与精细神经网络电位(MACE)进行了比较。虽然两种方法在定性上一致,但MACE势主要预测更高的激活势垒,我们将其归因于更准确地表示了过渡态密切原子接触的能量惩罚。MACE模拟表明,CBZ在跃迁态后可以被动力学捕获在高能亚稳取向中。我们提出,水相的逸能吸附将填充最低能态和亚稳态的集合,为扩散提供了一个合理的动力学途径,相对于高能态,有效激活势垒降低。CBZ的扩散是由一个复杂的平动和旋转屏障所控制的,这一图景只有通过超越基于相互作用能量的描述才能获得。本研究为合理选择形状选择性沸石作为环境修复的有效吸附剂提供了依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Chemistry - A European Journal
Chemistry - A European Journal 化学-化学综合
CiteScore
7.90
自引率
4.70%
发文量
1808
审稿时长
1.8 months
期刊介绍: Chemistry—A European Journal is a truly international journal with top quality contributions (2018 ISI Impact Factor: 5.16). It publishes a wide range of outstanding Reviews, Minireviews, Concepts, Full Papers, and Communications from all areas of chemistry and related fields. Based in Europe Chemistry—A European Journal provides an excellent platform for increasing the visibility of European chemistry as well as for featuring the best research from authors from around the world. All manuscripts are peer-reviewed, and electronic processing ensures accurate reproduction of text and data, plus short publication times. The Concepts section provides nonspecialist readers with a useful conceptual guide to unfamiliar areas and experts with new angles on familiar problems. Chemistry—A European Journal is published on behalf of ChemPubSoc Europe, a group of 16 national chemical societies from within Europe, and supported by the Asian Chemical Editorial Societies. The ChemPubSoc Europe family comprises: Angewandte Chemie, Chemistry—A European Journal, European Journal of Organic Chemistry, European Journal of Inorganic Chemistry, ChemPhysChem, ChemBioChem, ChemMedChem, ChemCatChem, ChemSusChem, ChemPlusChem, ChemElectroChem, and ChemistryOpen.
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