Cochlear Aqueduct Advection and Diffusion Inferred from Computed Tomography Imaging with a Bayesian Approach.

IF 2.9 3区 医学 Q3 NEUROSCIENCES
Amal M A Alghamdi, Barbara K Mathiesen, Leo Miyakoshi, Maiken Nedergaard, Jakob S Jørgensen, Peter A R Bork
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引用次数: 0

Abstract

Purpose: Fluid flow and transport of therapeutic agents and pathogenic bacteria into the cochlea has been challenging to study due to its small size and location within bone. We here take advantage of recent non-invasive Computed Tomography (CT) imaging to infer transport parameters in a 1-dimensional advection-diffusion model of the cochlear aqueduct using a Bayesian approach.

Methods: Six male C56BL/6 mice injected with the small molecule tracer iohexol in cisterna magna were scanned every 5 min for 30 min in CT under anesthesia. Using the CT data to set boundary conditions, we solve the advection-diffusion equation for given advection and spatially varying diffusion parameters. The CT data is modeled as normally distributed around the model-predicted concentration. We specify priors for the model unknown parameters and infer their posterior distributions using Bayes' formula and the CUQIpy library. The statistical approach is validated using synthetic data.

Results: The evolution of the concentration of tracer in the cochlear aqueduct is well predicted by the advection-diffusion model using inferred parameters. Though diffusion of the small CT tracer varies along the aqueduct, it is usually near the free diffusion and therefore not likely to be influenced much by membranes or flow. Advection is inferred near zero in most cases. We show how to use these results to calculate transport through the cochlear aqueduct for other animals and molecules.

Conclusion: Free diffusion dominates transport of small molecules in the cochlear aqueduct, which can therefore be effectively approximated using simple 1-dimensional (advection-)diffusion formulas.

用贝叶斯方法从计算机断层成像推断耳蜗导水管平流和扩散。
目的:由于耳蜗体积小且位于骨内,因此研究耳蜗内治疗剂和致病菌的流体流动和转运一直具有挑战性。在此,我们利用最近的非侵入性计算机断层扫描(CT)成像,利用贝叶斯方法推断耳蜗导水管一维平流-扩散模型的传输参数。方法:6只雄性C56BL/6小鼠,大池注射小分子示踪剂碘己醇,麻醉下CT每5 min扫描一次,共30 min。利用CT数据设置边界条件,求解给定平流和空间变化扩散参数的平流扩散方程。CT数据在模型预测的浓度周围按正态分布建模。我们为模型未知参数指定先验,并使用贝叶斯公式和CUQIpy库推断其后验分布。利用合成数据对统计方法进行了验证。结果:平流-扩散模型能较好地预测耳蜗导水管内示踪剂浓度的变化。虽然小CT示踪剂的扩散沿渡槽变化,但它通常靠近自由扩散,因此不太可能受膜或流动的影响。在大多数情况下,推断平流接近零。我们展示了如何使用这些结果来计算其他动物和分子通过耳蜗导水管的运输。结论:小分子在耳蜗导水管内以自由扩散为主,因此可以用简单的一维(平流-)扩散公式进行有效的近似。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
4.10
自引率
12.50%
发文量
57
审稿时长
6-12 weeks
期刊介绍: JARO is a peer-reviewed journal that publishes research findings from disciplines related to otolaryngology and communications sciences, including hearing, balance, speech and voice. JARO welcomes submissions describing experimental research that investigates the mechanisms underlying problems of basic and/or clinical significance. Authors are encouraged to familiarize themselves with the kinds of papers carried by JARO by looking at past issues. Clinical case studies and pharmaceutical screens are not likely to be considered unless they reveal underlying mechanisms. Methods papers are not encouraged unless they include significant new findings as well. Reviews will be published at the discretion of the editorial board; consult the editor-in-chief before submitting.
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