Investigating phloem transport dynamics in Arabidopsis through compartmental modelling of positron emission tomography data.

IF 5.2 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Jens Mincke, Karen J Kloth, Sarah Verbeke, Ken Kersemans, Stefaan Vandenberghe, Christian Vanhove, Kathy Steppe
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引用次数: 0

Abstract

Background: Phloem is the long-distance transport tissue of vascular plants in which photoassimilates are distributed from sources (e.g., leaves) to sinks (e.g., roots, fruits). Phloem transport occurs under pressure, making it very sensitive to manipulation and almost experimentally inaccessible. Therefore, functional data on phloem speed and dynamic distribution of photoassimilates along the transport pathway are still scarce, both in trees and herbaceous plants. This study presents a methodological pipeline to image phloem transport in very thin shoots of the model plant Arabidopsis using photosynthetic uptake of 11CO2 and state-of-the-art positron emission tomography (PET).

Results: Successful application of the latest generation preclinical PET scanners allowed in vivo visualization of internal movement of 11C-labelled photoassimilates inside primary and secondary shoots of 1 to 2 mm diameter every 5 min. Using this data as input in a compartmental model enabled estimation of (i) phloem front speed, and (ii) radial carbon partitioning between leakage-retrieval phloem, carbon storage and respiratory efflux. The methodology shows that the phloem front speed of recently fixed carbon in primary shoots was almost two-fold the speed in secondary shoots (128 vs. 70 µm s-1). Furthermore, it was estimated that the fraction of recently fixed 11CO2 that was unloaded from the phloem to the surrounding storage cells and retrieved back into the phloem was higher in primary shoots than in secondary shoots, and that allocation to the storage compartment was higher in secondary shoots. Within the primary shoot, the fraction of unloading and retrieval of the 11C-labelled photosynthates increased towards the inflorescence.

Conclusion: Here, we demonstrate the synergistic application of high-resolution PET scanning and compartmental modelling as a promising approach to advance our understanding of phloem dynamics in small-dimension plants, such as the model plant Arabidopsis. With this, an opportunity is created to explore the genetic basis of phloem dynamics.

通过正电子发射断层扫描数据的室室建模研究拟南芥韧皮部运输动力学。
背景:韧皮部是维管植物的长距离运输组织,其中光同化物质从源(如叶片)分布到汇(如根、果实)。韧皮部运输是在压力下进行的,这使得它对操纵非常敏感,几乎无法在实验中获得。因此,无论是在乔木还是草本植物中,关于韧皮部速度和光同化物在运输途径上的动态分布的功能数据仍然很少。本研究提出了一种方法管道,利用光合作用吸收11CO2和最先进的正电子发射断层扫描(PET)来成像模式植物拟南芥极细芽的韧皮部运输。结果:最新一代临床前PET扫描仪的成功应用使11c标记的光同化物每5分钟在1至2毫米直径的初生和次生芽内的体内运动可视化。使用这些数据作为区室模型的输入,可以估计(i)韧皮部前端速度,以及(ii)泄漏恢复韧皮部、碳储存和呼吸外排之间的径向碳分配。结果表明,初生芽韧皮部最近固定碳的前沿速度几乎是次生芽韧皮部前沿速度的2倍(128 vs 70µm s-1)。此外,估计初生芽中新近固定的11CO2从韧皮部卸载到周围的储存细胞并被回收到韧皮部的比例高于次生芽,并且分配到储存室的比例在次生芽中更高。在初生芽内,11c标记的光合产物的卸载和回收比例向花序方向增加。结论:在这里,我们证明了高分辨率PET扫描和区室建模的协同应用是一种有希望的方法,可以促进我们对小维植物(如模式植物拟南芥)韧皮部动力学的理解。有了这个,就有机会探索韧皮部动力学的遗传基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
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