Cuproptosis of endothelial cells in a hypoxic environment: from molecular classification to PMAIP1-targeted intervention.

IF 2.6 3区 生物学
Jie Wang, Xueying Chen, Huabin Wang, Wenjing Feng, Nan Lin, Xueyun Ren, Manman Wang, Lijun Gan
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引用次数: 0

Abstract

BACKGROUND: Acute myocardial infarction (AMI) is a critical and fatal cardiovascular condition. The role of cuproptosis as an emerging mechanism in the pathogenesis of AMI remains to be fully elucidated. METHODS: Patient data were acquired from the Gene Expression Omnibus database. Differential expression analysis was performed on cuproptosis-related genes (CRGs). LASSO regression was employed to identify key CRGs and develop a diagnostic classification model for AMI. Weighted gene co-expression network analysis was performed to investigate key modules associated with the disease and its molecular classification. Subsequently, machine learning techniques were used to identify critical genes within these modules. The diagnostic efficacy of these genes for AMI was assessed using receiver operating characteristic analysis. The functions of the identified key genes were ultimately validated at the cellular level. RESULTS: Six characteristic CRGs were selected via LASSO regression. The AMI diagnostic classification model based on these CRGs demonstrated superior performance. Patients were classified into two subtypes related to cuproptosis, revealing significant differences in enrichment pathways between these subtypes. SYTL3, SCML1, and PMAIP1 were identified as key genes for AMI, with area under the curves of 0.813, 0.795, and 0.873, respectively. Knocking down PMAIP1 expression reduced intracellular copper levels in hypoxia-induced HUVECs. CONCLUSIONS: This study clarifies the role of cuproptosis in AMI and highlights the potential involvement of PMAIP1, providing a theoretical basis for further investigation into cuproptosis in AMI.

缺氧环境下内皮细胞铜变:从分子分类到pmaip1靶向干预
背景:急性心肌梗死(AMI)是一种严重和致命的心血管疾病。作为AMI发病机制中的一种新兴机制,铜突起的作用仍有待充分阐明。方法:从Gene Expression Omnibus数据库获取患者数据。对铜裂相关基因(CRGs)进行差异表达分析。采用LASSO回归识别关键crg,建立AMI诊断分类模型。采用加权基因共表达网络分析来研究与该疾病相关的关键模块及其分子分类。随后,机器学习技术被用于识别这些模块中的关键基因。通过受试者工作特征分析评估这些基因对AMI的诊断效果。鉴定的关键基因的功能最终在细胞水平上得到验证。结果:通过LASSO回归筛选出6个特征crg。基于这些CRGs的AMI诊断分类模型表现出优异的性能。将患者分为两种与铜质增生相关的亚型,揭示了这些亚型之间富集途径的显著差异。SYTL3、SCML1和PMAIP1被鉴定为AMI的关键基因,曲线下面积分别为0.813、0.795和0.873。在缺氧诱导的huvec中,敲低PMAIP1表达可降低细胞内铜水平。结论:本研究明确了铜倾在AMI中的作用,并强调了PMAIP1的潜在参与,为进一步研究AMI中的铜倾提供了理论基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Hereditas
Hereditas Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.80
自引率
3.70%
发文量
0
期刊介绍: For almost a century, Hereditas has published original cutting-edge research and reviews. As the Official journal of the Mendelian Society of Lund, the journal welcomes research from across all areas of genetics and genomics. Topics of interest include human and medical genetics, animal and plant genetics, microbial genetics, agriculture and bioinformatics.
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