Multimodal brain tumor segmentation and classification based on optimized DeepLabV3 + and fused fire module with self-attention.

IF 4.8 3区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL
Muhammad Sami Ullah, Muhammad Attique Khan, Yunyoung Nam, Nouf Abdullah Almujally, Areej Alasiry, Mehrez Marzougui, Juan M Gorriz, Amir Hussain
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引用次数: 0

Abstract

In this work, we propose a novel deep learning architecture for brain tumor segmentation and classification, SMDeepNet, which is based on an optimized DeepLabV3 +  + and a Fused Fire Module with Self-Attention. The segmentation framework comprises down- and up-sampling based on a DeepLabV3 + neural network and is optimized by dynamically initializing hyperparameters for training the backbone ResNet-50 architecture. During the down-sampling or encoder stage, the Atrous Spatial Pyramid Pooling (ASPP) module extracted features using convolutional layers with various filter sizes and dilations. These features are then passed to the up-sampling or decoder section for final segmentation. The classification framework comprises two sub-frameworks: a fire-residual bottleneck (Fire-RB) and a Hybrid Efficient Attention (Hybrid-EA). The Fire-RB framework comprises several parallel blocks: one side implements squeeze-and-expand behavior in the fire mechanism, and the other implements residual bottlenecks. The two parallel blocks are concatenated, and features are extracted from Fire-RB. The Hybrid-EA model is a custom variant of the pre-trained EfficientNetB0 model that incorporates a self-attention mechanism. The self-attention mechanism enhanced the functionality of the EfficientNetB0 model. Features from Fire-RB and Hybrid-EA are concatenated channel-wise, and the final modality classification is performed. The BraTS 2023 dataset is used in this work to evaluate the proposed methodologies. Segmentation results indicate that accuracy, Dice Score, and Intersection over Union (IOU) are 0.9871, 0.9420, and 0.8951, respectively. Modality classification results indicate an accuracy of 0.9920, which is improved over the recent state-of-the-art techniques.

基于优化DeepLabV3 +和自关注融合火灾模块的多模态脑肿瘤分割分类。
在这项工作中,我们提出了一种新的用于脑肿瘤分割和分类的深度学习架构SMDeepNet,该架构基于优化的DeepLabV3 + +和具有自关注的融合火灾模块。分割框架包括基于DeepLabV3 +神经网络的下采样和上采样,并通过动态初始化用于训练骨干ResNet-50架构的超参数进行优化。在下采样或编码器阶段,阿特劳斯空间金字塔池(ASPP)模块使用各种滤波器大小和膨胀的卷积层提取特征。然后将这些特征传递给上采样或解码器部分以进行最终分割。该分类框架包括两个子框架:fire-residual bottleneck (Fire-RB)和Hybrid Efficient Attention (Hybrid- ea)。fire - rb框架由几个并行块组成:一边在fire机制中实现挤压和扩展行为,另一边实现剩余瓶颈。将两个并行块连接起来,并从Fire-RB中提取特征。Hybrid-EA模型是预先训练的EfficientNetB0模型的自定义变体,它包含了一个自关注机制。自关注机制增强了EfficientNetB0模型的功能。来自Fire-RB和Hybrid-EA的特征按通道连接,并执行最终的模态分类。本研究使用BraTS 2023数据集来评估所提出的方法。分割结果表明,准确率为0.9871,Dice Score为0.9420,Intersection over Union (IOU)为0.8951。模态分类结果表明准确率为0.9920,比最近最先进的技术有所提高。
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来源期刊
European Journal of Medical Research
European Journal of Medical Research 医学-医学:研究与实验
CiteScore
3.20
自引率
0.00%
发文量
247
审稿时长
>12 weeks
期刊介绍: European Journal of Medical Research publishes translational and clinical research of international interest across all medical disciplines, enabling clinicians and other researchers to learn about developments and innovations within these disciplines and across the boundaries between disciplines. The journal publishes high quality research and reviews and aims to ensure that the results of all well-conducted research are published, regardless of their outcome.
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