Dispersion Control in Stochastic Biomolecular Systems Without Peak Shifts

IF 4.2 4区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
IEEE Transactions on NanoBioscience Pub Date : 2026-07-01 Epub Date: 2026-03-04 DOI:10.1109/TNB.2026.3670609
Taishi Kotsuka;Enoch Yeung
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Abstract

Intracellular biomolecular circuits often exhibit multimodal stationary distributions due to intrinsic noise, and the dispersion around each peak governs phenotypic robustness and adaptability. However, tuning dispersion by changing reaction parameters typically shifts peak positions or even alters modality. In this paper, we derive conditions that enable peak-shape control without peak shifts using the Chemical Fokker-Planck Equation. First, we formalize sharpness as a peak-local measure via probability ratios and show that the positions of peaks and valleys remain invariant as a control parameter varies. Second, we prove that sharpness varies monotonically as the control parameter increases, while the modality and the positions of extrema remain fixed. We validate these results with Monte Carlo simulations of two univariate networks: the burst-and-trickle gene expression system (unimodal) and the Schlögl system (bimodal), achieving dispersion tuning without peak shifts. Finally, we present preliminary multivariate evidence on the Genetic Toggle Switch, where the marginal distribution of one protein exhibits similar sharpness control. Our results provide structural design rules for engineering stochastic phenotypes while safeguarding the desired modal structure.
无峰移随机生物分子系统的色散控制。
由于固有噪声,细胞内生物分子电路通常表现出多模态平稳分布,每个峰周围的分散决定了表型的鲁棒性和适应性。然而,通过改变反应参数来调整色散通常会改变峰位置甚至改变模态。本文利用化学Fokker-Planck方程,推导出无峰移的峰形控制条件。首先,我们通过概率比将清晰度形式化为峰局部度量,并表明随着控制参数的变化,峰和谷的位置保持不变。其次,我们证明了锐度随控制参数的增加而单调变化,而模态和极值的位置保持不变。我们通过两个单变量网络的蒙特卡罗模拟验证了这些结果:突发-涓滴基因表达系统(单峰)和Schlögl系统(双峰),实现了无峰移的色散调谐。最后,我们提出了关于基因开关的初步多元证据,其中一种蛋白质的边际分布表现出类似的清晰度控制。我们的研究结果为工程随机表型提供了结构设计规则,同时保证了所需的模态结构。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
IEEE Transactions on NanoBioscience
IEEE Transactions on NanoBioscience 工程技术-纳米科技
CiteScore
7.00
自引率
5.10%
发文量
197
审稿时长
>12 weeks
期刊介绍: The IEEE Transactions on NanoBioscience reports on original, innovative and interdisciplinary work on all aspects of molecular systems, cellular systems, and tissues (including molecular electronics). Topics covered in the journal focus on a broad spectrum of aspects, both on foundations and on applications. Specifically, methods and techniques, experimental aspects, design and implementation, instrumentation and laboratory equipment, clinical aspects, hardware and software data acquisition and analysis and computer based modelling are covered (based on traditional or high performance computing - parallel computers or computer networks).
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