2D HSQC-derived “dark forest” image with enhanced local resolution via first derivative processing–logarithmic cosine transformation (FDP–LCT): Demonstration on per-O-ethylated kappa- and iota-carrageenans

IF 2.5 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Carbohydrate Research Pub Date : 2026-05-01 Epub Date: 2026-02-04 DOI:10.1016/j.carres.2026.109852
Xiaohui Xing , Jeffrey P. Tingley , Barinder Bajwa , Vincent Weiler , Tony Montina , Steve W. Cui , D. Wade Abbott
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引用次数: 0

Abstract

Solution-state two-dimensional (2D) 1H–13C HSQC NMR is a powerful tool for polysaccharide structure elucidation but often suffers from limited sensitivity and broad peaks due to the low natural abundance of 13C and poor digital resolution of the indirect dimension, respectively, as well as the typically low concentration and high viscosity of polysaccharide solutions. It is therefore pivotal to improve the resolution of 2D 1H–13C HSQC spectra for accurate peak picking and assignment, particularly in the indirect 13C dimension. In this study, we developed an algorithm that combines first derivative processing with a novel logarithmic cosine transformation (FDP–LCT) to convert 2D 1H–13C HSQC spectra into local-resolution-enhanced images resembling a dark forest of straight, densely standing trees. These images revealed sharpened spectral features and enabled extraction of precise 1H and 13C chemical shifts, as demonstrated using per-O-ethylated kappa- and iota-carrageenans, two sulfated galactans differing only by a single substitution at the O-2 position of anhydrogalactose. In conclusion, this approach provides an effective post-acquisition strategy for enhancing digital resolution in 2D HSQC spectra and improving the structural analysis of closely related complex polysaccharides.

Abstract Image

通过一阶导数处理-对数余弦变换(FDP-LCT)增强局部分辨率的二维hsqc衍生的“黑暗森林”图像:对每o -乙基化kappa-和ioda -卡拉胶的演示。
溶液态二维(2D) 1H-13C HSQC NMR是分析多糖结构的有力工具,但由于13C天然丰度低,间接维度的数字分辨率较差,以及多糖溶液的典型低浓度和高粘度,往往存在灵敏度有限和峰宽的问题。因此,提高二维1H-13C HSQC光谱的分辨率,以实现准确的峰拾取和分配,特别是在间接13C维度上,是至关重要的。在这项研究中,我们开发了一种将一阶导数处理与一种新的对数余弦变换(FDP-LCT)相结合的算法,将2D 1H-13C HSQC光谱转换为局部分辨率增强的图像,类似于由笔直、茂密的树木组成的黑暗森林。这些图像显示了锐利的光谱特征,并能够提取精确的1H和13C化学位移,正如使用过- o -乙基化的kappa-和iota-卡拉胶所证明的那样,两种硫酸盐化的半乳糖只在无氢半乳糖的O-2位置上有一个取代。总之,该方法为提高二维HSQC光谱的数字分辨率和改善密切相关的复合多糖的结构分析提供了有效的采集后策略。
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来源期刊
Carbohydrate Research
Carbohydrate Research 化学-生化与分子生物学
CiteScore
5.00
自引率
3.20%
发文量
183
审稿时长
3.6 weeks
期刊介绍: Carbohydrate Research publishes reports of original research in the following areas of carbohydrate science: action of enzymes, analytical chemistry, biochemistry (biosynthesis, degradation, structural and functional biochemistry, conformation, molecular recognition, enzyme mechanisms, carbohydrate-processing enzymes, including glycosidases and glycosyltransferases), chemical synthesis, isolation of natural products, physicochemical studies, reactions and their mechanisms, the study of structures and stereochemistry, and technological aspects. Papers on polysaccharides should have a "molecular" component; that is a paper on new or modified polysaccharides should include structural information and characterization in addition to the usual studies of rheological properties and the like. A paper on a new, naturally occurring polysaccharide should include structural information, defining monosaccharide components and linkage sequence. Papers devoted wholly or partly to X-ray crystallographic studies, or to computational aspects (molecular mechanics or molecular orbital calculations, simulations via molecular dynamics), will be considered if they meet certain criteria. For computational papers the requirements are that the methods used be specified in sufficient detail to permit replication of the results, and that the conclusions be shown to have relevance to experimental observations - the authors'' own data or data from the literature. Specific directions for the presentation of X-ray data are given below under Results and "discussion".
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