Genetic improvement of resistance to preharvest sprouting using a major QTL allele for embryo dormancy in rice.

IF 3.6 3区 农林科学 Q1 AGRONOMY
Molecular Breeding Pub Date : 2025-12-10 eCollection Date: 2025-12-01 DOI:10.1007/s11032-025-01623-8
Kamal Bhattarai, Min Guo, Marya Bibi, Huayu Xu, Christian De Guzman, Xing-You Gu
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引用次数: 0

Abstract

Lack of seed dormancy (SD) often causes pre-harvest sprouting (PHS) or inadequate germination in cereal crops and seed production. This research aimed to integrate a dormancy (D) allele isolated from weedy rice at qSD12 into the genetic background of a restoration-of-fertility line (RFL) to mitigate the PHS and germination problems. A hybrid F2 population was developed to map quantitative trait loci (QTLs) and model their epistatic and genotype-by-environment interactions. Twelve QTLs for flowering time (FT, 3), plant height (5) or SD (4) were identified. Of the 4 SD loci, qSD12 explained most of the phenotypic variance (R2 = 0.34), and 2 (qSD3 & qSD6) have the D alleles from the RFL. qSD12 interacted with qSD3 or qSD7-2, with the presence of the D allele at qSD12 increasing the effects of the others, as well as the duration of seed storage at 24 or 40 ˚C for dormancy release. The F2 plant-derived F4 to F6 lines were marker-assisted selected. The major effect of qSD12 on seed germination and on-panicle sprouting was confirmed with the F4 and F5 lines, respectively. A sample of F2 plant-derived backcross (BC1F1) plants, which are heterozygous for 2-4 of the SD QTLs, was evaluated for agronomic traits and genotyped with an array of SNP markers. Recurrent backcrossing with the RFL and genomic selection are used to pyramid the D alleles from qSD12 and other locus/loci to develop new varieties and RF lines with improved resistance to PHS.

Supplementary information: The online version contains supplementary material available at 10.1007/s11032-025-01623-8.

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利用水稻胚休眠主要QTL等位基因对收获前发芽抗性的遗传改良。
在谷类作物和种子生产中,缺乏种子休眠(SD)经常导致收获前发芽(PHS)或发芽不足。本研究旨在将从杂草水稻qSD12分离的休眠(D)等位基因整合到恢复育性系(RFL)的遗传背景中,以缓解小灵通和发芽问题。建立了一个F2杂交群体,绘制了数量性状位点(qtl)图谱,并建立了它们的上位性和基因型-环境相互作用模型。共鉴定出12个与开花时间(FT, 3)、株高(5)和SD(4)有关的qtl。在4个SD位点中,qSD12解释了大部分表型变异(R2 = 0.34), 2个(qSD3和qSD6)具有来自RFL的D等位基因。qSD12与qSD3或qSD7-2相互作用,其中D等位基因的存在增加了其他等位基因的作用,并延长了种子在24或40˚C下的休眠释放时间。采用分子标记辅助筛选F2植物源性F4 ~ F6系。用F4系和F5系分别证实了qSD12对种子萌发和穗上萌发的主要影响。以2-4个SD qtl为杂合子的F2植物源回交(BC1F1)植株为样本,对其农艺性状进行了评价,并用一系列SNP标记进行了基因分型。利用RFL反复回交和基因组选择,将qSD12和其他位点的D等位基因金字塔化,培育出抗小灵通的新品种和RF系。补充资料:在线版本提供补充资料,网址为10.1007/s11032-025-01623-8。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Molecular Breeding
Molecular Breeding 农林科学-农艺学
CiteScore
5.60
自引率
6.50%
发文量
67
审稿时长
1.5 months
期刊介绍: Molecular Breeding is an international journal publishing papers on applications of plant molecular biology, i.e., research most likely leading to practical applications. The practical applications might relate to the Developing as well as the industrialised World and have demonstrable benefits for the seed industry, farmers, processing industry, the environment and the consumer. All papers published should contribute to the understanding and progress of modern plant breeding, encompassing the scientific disciplines of molecular biology, biochemistry, genetics, physiology, pathology, plant breeding, and ecology among others. Molecular Breeding welcomes the following categories of papers: full papers, short communications, papers describing novel methods and review papers. All submission will be subject to peer review ensuring the highest possible scientific quality standards. Molecular Breeding core areas: Molecular Breeding will consider manuscripts describing contemporary methods of molecular genetics and genomic analysis, structural and functional genomics in crops, proteomics and metabolic profiling, abiotic stress and field evaluation of transgenic crops containing particular traits. Manuscripts on marker assisted breeding are also of major interest, in particular novel approaches and new results of marker assisted breeding, QTL cloning, integration of conventional and marker assisted breeding, and QTL studies in crop plants.
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