DFT, MM and ADMET integrated computations on a naturally occurring biomolecule (Luteolin-7-O-β-d-glucoside) and its interaction with various protein-receptors reveal its phase-dependent nonlinear optical and multifunctional drug activity

IF 5.3 Q2 CHEMISTRY, PHYSICAL
Chemical Physics Impact Pub Date : 2025-12-01 Epub Date: 2025-11-20 DOI:10.1016/j.chphi.2025.100978
Ryan John Laverne , Anjali Sharma , Abha , Aman Tiwari , Sudheesh K. Shukla , Penny P. Govender , Ashok Kumar Mishra
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引用次数: 0

Abstract

This study presents a comprehensive computational investigation of Luteolin-7-O-β-d-glucoside, a flavonoid glycoside isolated from Cucumis sativus L. (cucumber) seeds, using integrated density functional theory (DFT), molecular mechanics (MM), and ADMET analysis. DFT calculations at the B3LYP/6–31+G(d,p) level are performed to analyze spectroscopic properties (IR, NMR, UV–Visible), nonlinear optical characteristics, frontier molecular orbitals, molecular electrostatic potential surface and thermodynamic parameters. The optimized structure exhibited 150 vibrational modes with no imaginary frequencies. IR and NMR spectra for the titled molecule show good agreement between calculated and experimental spectroscopic data. UV–vis spectrum is reported, and its analysis revealed maximum absorption at 357.50 nm with a transition energy of 3.47 eV and oscillator strength 0.433. Electronic structure analysis demonstrates a narrow HOMO-LUMO gap (0.146 au), indicating high chemical reactivity and charge-transfer capacity. Remarkable phase-dependent NLO characteristics are observed, with first-order hyperpolarizability values 70 times higher than that of the reference molecule urea in the gas phase and 206 times higher in ethanol solution. Molecular docking studies against seven physiologically relevant proteins reveal strong binding affinities and optimal interaction against hepatitis B viral capsid with final intermolecular energy of −13.53 kcal/mol and binding free energy of −10.25 kcal/mol at 30 nM inhibition constant. ADMET analysis indicates favourable safety profiles with moderate bioavailability. The integrated computational approach demonstrates that Luteolin-7-O-β-d-glucoside may be explored as a potential multifunctional drug candidate for hepatitis B, Alzheimer's disease, cancer, type 2 Diabetes and other metabolic diseases, along with nonlinear optical applications that dominate in the liquid phase.

Abstract Image

DFT、MM和ADMET对天然存在的生物分子(木犀草素-7- o -β-d-葡萄糖苷)及其与多种蛋白质受体的相互作用进行了综合计算,揭示了其相依赖的非线性光学和多功能药物活性
本研究利用集成密度泛函理论(DFT)、分子力学(MM)和ADMET分析对从黄瓜种子中分离的黄酮类苷木犀草素-7- o -β-d-葡萄糖苷进行了全面的计算研究。在B3LYP/ 6-31 +G(d,p)水平上进行DFT计算,分析光谱性质(IR、NMR、uv -可见光)、非线性光学特性、前沿分子轨道、分子静电势面和热力学参数。优化后的结构有150种振型,无虚频率。所得分子的红外和核磁共振光谱计算值与实验值吻合较好。紫外可见光谱分析表明,该材料在357.50 nm处最大吸收,跃迁能为3.47 eV,振荡强度为0.433。电子结构分析表明,HOMO-LUMO隙窄(0.146 au),表明具有较高的化学反应性和电荷转移能力。观察到显著的相依赖性NLO特性,其一阶超极化率值在气相中比参考分子尿素高70倍,在乙醇溶液中比参考分子高206倍。与7种生理相关蛋白的分子对接研究表明,在30 nM抑制常数下,该蛋白与乙型肝炎病毒衣壳具有较强的结合亲和力和最佳的相互作用,最终分子间能为- 13.53 kcal/mol,结合自由能为- 10.25 kcal/mol。ADMET分析显示良好的安全性和中等的生物利用度。综合计算方法表明,木黄素-7- o -β-d-葡萄糖苷可以作为一种潜在的多功能候选药物,用于治疗乙型肝炎、阿尔茨海默病、癌症、2型糖尿病和其他代谢疾病,以及在液相中占主导地位的非线性光学应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Chemical Physics Impact
Chemical Physics Impact Materials Science-Materials Science (miscellaneous)
CiteScore
2.60
自引率
0.00%
发文量
65
审稿时长
46 days
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