Bayesian mapping of mortality clusters.

IF 2.1 3区 数学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Andrea Sottosanti, Enrico Bovo, Pietro Belloni, Giovanna Boccuzzo
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引用次数: 0

Abstract

Disease mapping analyses the distribution of several disease outcomes within a territory. Primary goals include identifying areas with unexpected changes in mortality rates, studying the relation among multiple diseases, and dividing the analysed territory into clusters based on the observed levels of disease incidence or mortality. In this work, we focus on detecting spatial mortality clusters, that occur when neighbouring areas within a territory exhibit similar mortality levels due to one or more diseases. When multiple causes of death are examined together, it is relevant to identify not only the spatial boundaries of the clusters but also the diseases that lead to their formation. However, existing methods in literature struggle to address this dual problem effectively and simultaneously. To overcome these limitations, we introduce perla, a multivariate Bayesian model that clusters areas in a territory according to the observed mortality rates of multiple causes of death, also exploiting the information of external covariates. Our model incorporates the spatial structure of data directly into the clustering probabilities by leveraging the stick-breaking formulation of the multinomial distribution. Additionally, it exploits suitable global-local shrinkage priors to ensure that the detection of clusters depends on diseases showing concrete increases or decreases in mortality levels, while excluding uninformative diseases. We propose a Markov chain Monte Carlo algorithm for posterior inference that consists of closed-form Gibbs sampling moves for nearly every model parameter, without requiring complex tuning operations. This work is primarily motivated by a case study on the territory of a local unit within the Italian public healthcare system, known as ULSS6 Euganea. To demonstrate the flexibility and effectiveness of our methodology, we also validate perla with a series of simulation experiments and an extensive case study on mortality levels in U.S. counties.

死亡率聚类的贝叶斯映射。
疾病制图分析在一个地区内几种疾病结果的分布。主要目标包括确定死亡率发生意外变化的地区,研究多种疾病之间的关系,并根据观察到的疾病发病率或死亡率水平将所分析的地区划分为类。在这项工作中,我们的重点是检测空间死亡集群,当一个领土内的邻近地区由于一种或多种疾病而表现出相似的死亡率水平时,就会发生这种集群。在一起检查多种死亡原因时,不仅要确定集群的空间边界,还要确定导致集群形成的疾病。然而,现有的文献方法难以同时有效地解决这一双重问题。为了克服这些限制,我们引入了perla,这是一个多变量贝叶斯模型,根据观察到的多种死亡原因的死亡率对一个领土内的区域进行聚类,同时也利用了外部协变量的信息。我们的模型通过利用多项分布的破棍公式,将数据的空间结构直接纳入聚类概率。此外,它利用适当的全局-局部收缩先验,以确保对群集的检测取决于显示死亡率水平具体增加或减少的疾病,同时排除无信息的疾病。我们提出了一种马尔可夫链蒙特卡罗算法用于后验推理,该算法由几乎每个模型参数的封闭形式吉布斯采样移动组成,不需要复杂的调谐操作。这项工作的主要动机是对意大利公共医疗保健系统(ULSS6 Euganea)内的一个地方单位进行的案例研究。为了证明我们方法的灵活性和有效性,我们还通过一系列模拟实验和对美国各县死亡率水平的广泛案例研究来验证perla。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Biostatistics
Biostatistics 生物-数学与计算生物学
CiteScore
5.10
自引率
4.80%
发文量
45
审稿时长
6-12 weeks
期刊介绍: Among the important scientific developments of the 20th century is the explosive growth in statistical reasoning and methods for application to studies of human health. Examples include developments in likelihood methods for inference, epidemiologic statistics, clinical trials, survival analysis, and statistical genetics. Substantive problems in public health and biomedical research have fueled the development of statistical methods, which in turn have improved our ability to draw valid inferences from data. The objective of Biostatistics is to advance statistical science and its application to problems of human health and disease, with the ultimate goal of advancing the public''s health.
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