{"title":"A Binding Site Competition Model for Relative Sliding of Antiparallel Microtubules Mediated by Kinesin-4 Motors and PRC1 Proteins.","authors":"Yao Wang,Jie Wang,Yu-Ru Liu,Hui Li,Ping Xie","doi":"10.1021/acs.jctc.5c00902","DOIUrl":null,"url":null,"abstract":"The dynamic behaviors of the mitotic spindle composed of antiparallel microtubules (MTs) are critical for the successful completion of cell division. Motor proteins kinesin-4 and MT cross-linking proteins PRC1 can cooperatively regulate the length of antiparallel MT overlaps. However, the physical mechanism of relative sliding of the two MTs by the two types of proteins to regulate the overlap length is unclear. Here, using both the theoretical analysis and numerical simulation, we first study the clusters at MT plus ends formed by kinesin-4s alone and those formed by kinesin-4s and PRC1s, where a kinesin-4 and a PRC1 can form an unstable complex. The forward movement of the complex is proposed to be realized via a \"binding site competition\" mechanism; namely, the competition of the site bound by the kinesin-4 head with the PRC1 head makes the complex move forward. Furthermore, we study MT sliding mediated by the kinesin-4s and PRC1s. The theoretical/numerical results reproduce quantitatively the published experimental results and, in particular, the puzzling results showing that the initial MT sliding velocity increases with the initial MT overlap length. The study indicates that the MT sliding by the kinesin-4s and PRC1s occurs via the \"binding site competition\" mechanism, which is different from the well-known \"force-driving\" mechanism by kinesin-5 motors, where the forces generated by the kinesin-5s drive the MT sliding.","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"56 1","pages":""},"PeriodicalIF":5.5000,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.5c00902","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
The dynamic behaviors of the mitotic spindle composed of antiparallel microtubules (MTs) are critical for the successful completion of cell division. Motor proteins kinesin-4 and MT cross-linking proteins PRC1 can cooperatively regulate the length of antiparallel MT overlaps. However, the physical mechanism of relative sliding of the two MTs by the two types of proteins to regulate the overlap length is unclear. Here, using both the theoretical analysis and numerical simulation, we first study the clusters at MT plus ends formed by kinesin-4s alone and those formed by kinesin-4s and PRC1s, where a kinesin-4 and a PRC1 can form an unstable complex. The forward movement of the complex is proposed to be realized via a "binding site competition" mechanism; namely, the competition of the site bound by the kinesin-4 head with the PRC1 head makes the complex move forward. Furthermore, we study MT sliding mediated by the kinesin-4s and PRC1s. The theoretical/numerical results reproduce quantitatively the published experimental results and, in particular, the puzzling results showing that the initial MT sliding velocity increases with the initial MT overlap length. The study indicates that the MT sliding by the kinesin-4s and PRC1s occurs via the "binding site competition" mechanism, which is different from the well-known "force-driving" mechanism by kinesin-5 motors, where the forces generated by the kinesin-5s drive the MT sliding.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.