AI-driven drug discovery using a context-aware hybrid model to optimize drug-target interactions.

IF 3.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Ajay Kumar, Shashi Kant Gupta, SeongKi Kim
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引用次数: 0

Abstract

Drug discovery is a challenging and resource-intensive process characterized by high costs, prolonged development timelines, and regulatory hurdles in the pharmaceutical sector. AI-driven recommendation systems have emerged as an effective approach to enhance candidate selection and optimize drug-target interactions. Typical drug discovery methods are expensive, time-consuming, and frequently have a high failure rate. The inability to quickly identify suitable drug candidates is a significant challenge due to the lack of effective predictive models. To address these issues, the Context-Aware Hybrid Ant Colony Optimized Logistic Forest (CA-HACO-LF) model is proposed. This model combines ant colony optimization for feature selection with logistic forest classification, improving drug-target interaction prediction. By incorporating context-aware learning, the model enhances adaptability and accuracy in drug discovery applications. The research utilized a Kaggle dataset containing over 11,000 drug details. During pre-processing, techniques such as text normalization (lowercasing, punctuation removal, and elimination of numbers and spaces) were applied. Stop word removal and tokenization ensured meaningful feature extraction, while lemmatization refined the word representations to enhance model performance. Feature extraction was further improved using N-grams and Cosine Similarity to assess the semantic proximity of drug descriptions, aiding the model in identifying relevant drug-target interactions and evaluating textual relevance in context. In the classification phase, the CA-HACO-LF model integrates a customized Ant Colony Optimization-based Random Forest (RF) with Logistic Regression (LR) to enhance predictive accuracy in identifying drug-target interactions, leveraging the extracted features and cosine similarity for better performance. The implementation is performed using Python for feature extraction, similarity measurement, and classification. The proposed CA-HACO-LF model outperforms existing methods, demonstrating superior performance across various metrics, including accuracy (0.986%), precision, recall, F1 Score, RMSE, AUC-ROC, MSE, MAE, F2 Score, and Cohen's Kappa.

使用上下文感知混合模型优化药物-靶标相互作用的人工智能驱动药物发现。
药物发现是一个具有挑战性和资源密集型的过程,其特点是成本高,开发时间长,制药部门存在监管障碍。人工智能驱动的推荐系统已经成为增强候选药物选择和优化药物-靶点相互作用的有效方法。典型的药物发现方法昂贵、耗时,而且失败率很高。由于缺乏有效的预测模型,无法快速识别合适的候选药物是一个重大挑战。为了解决这些问题,提出了上下文感知混合蚁群优化Logistic森林(CA-HACO-LF)模型。该模型将蚁群特征选择优化与logistic森林分类相结合,提高了药物-靶点相互作用的预测能力。通过结合上下文感知学习,该模型提高了药物发现应用的适应性和准确性。该研究利用了包含超过11,000种药物细节的Kaggle数据集。在预处理过程中,应用了文本规范化(小写字母、标点符号去除、数字和空格消除)等技术。停止词移除和标记化确保了有意义的特征提取,而词法化改进了词表示以提高模型性能。使用N-grams和余弦相似度进一步改进了特征提取,以评估药物描述的语义接近性,帮助模型识别相关的药物-靶标相互作用并评估上下文中的文本相关性。在分类阶段,CA-HACO-LF模型将基于蚁群优化的定制化随机森林(RF)与Logistic回归(LR)相结合,利用提取的特征和余弦相似度来提高识别药物-靶标相互作用的预测准确性。该实现使用Python进行特征提取、相似性测量和分类。所提出的CA-HACO-LF模型优于现有方法,在准确率(0.986%)、精密度、召回率、F1 Score、RMSE、AUC-ROC、MSE、MAE、F2 Score和Cohen’s Kappa等指标上表现优异。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Scientific Reports
Scientific Reports Natural Science Disciplines-
CiteScore
7.50
自引率
4.30%
发文量
19567
审稿时长
3.9 months
期刊介绍: We publish original research from all areas of the natural sciences, psychology, medicine and engineering. You can learn more about what we publish by browsing our specific scientific subject areas below or explore Scientific Reports by browsing all articles and collections. Scientific Reports has a 2-year impact factor: 4.380 (2021), and is the 6th most-cited journal in the world, with more than 540,000 citations in 2020 (Clarivate Analytics, 2021). •Engineering Engineering covers all aspects of engineering, technology, and applied science. It plays a crucial role in the development of technologies to address some of the world''s biggest challenges, helping to save lives and improve the way we live. •Physical sciences Physical sciences are those academic disciplines that aim to uncover the underlying laws of nature — often written in the language of mathematics. It is a collective term for areas of study including astronomy, chemistry, materials science and physics. •Earth and environmental sciences Earth and environmental sciences cover all aspects of Earth and planetary science and broadly encompass solid Earth processes, surface and atmospheric dynamics, Earth system history, climate and climate change, marine and freshwater systems, and ecology. It also considers the interactions between humans and these systems. •Biological sciences Biological sciences encompass all the divisions of natural sciences examining various aspects of vital processes. The concept includes anatomy, physiology, cell biology, biochemistry and biophysics, and covers all organisms from microorganisms, animals to plants. •Health sciences The health sciences study health, disease and healthcare. This field of study aims to develop knowledge, interventions and technology for use in healthcare to improve the treatment of patients.
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