Nonadiabatic photodissociation dynamics of indole using multi-configuration time-dependent Hartree method.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Soumyadip Ray, Sudip Sasmal, Padmabati Mondal
{"title":"Nonadiabatic photodissociation dynamics of indole using multi-configuration time-dependent Hartree method.","authors":"Soumyadip Ray, Sudip Sasmal, Padmabati Mondal","doi":"10.1063/5.0287684","DOIUrl":null,"url":null,"abstract":"<p><p>Indole, being a biologically relevant and abundant chromophore, is a prime molecule of interest in both experimental and computational research. In the current work, the N-H photodissociation dynamics of indole have been studied using nonadiabatic quantum dynamics. Potential energy cuts (PECs) along important vibrational modes have been calculated using the multi-state complete active space self-consistent field method with (10,9) active space. The important vibrational modes for the whole process were detected based on symmetry analysis and the strength of the vibronic couplings. The multi-mode multi-state model vibronic Hamiltonian is constructed by the parameters obtained from the fitting of ab initio PECs, including Morse and harmonic functions and vibronic couplings. The nonadiabatic quantum dynamics is performed using a four state multimode Hamiltonian with the multi-configuration time-dependent Hartree method. For the N-H stretching, Q42 turns out to be the most important among all normal modes. The third excited diabatic state shows an anharmonic, dissociative π-σ* character along Q42. The non-adiabatic coupling strength between the La and π-σ* plays a crucial role in controlling the photodissociation. The out-of-plane C-N-H bending, despite being directly related to the N-H group, is found to have a negligible contribution to the photodissociation process. Two timescales obtained from the population dynamics, 26 and 113 fs, are attributed to internal conversion from the second excited La state to the π-σ* states and photodissociation at the π-σ*, respectively, and are in good agreement with timescales obtained from previous experimental studies. Around 80% reaction probability for N-H fission of indole is recorded after 200 fs. This study of photofission of indole is crucial for understanding the photodynamics of similar large molecules.</p>","PeriodicalId":15313,"journal":{"name":"Journal of Chemical Physics","volume":"163 14","pages":""},"PeriodicalIF":3.1000,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Physics","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1063/5.0287684","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Indole, being a biologically relevant and abundant chromophore, is a prime molecule of interest in both experimental and computational research. In the current work, the N-H photodissociation dynamics of indole have been studied using nonadiabatic quantum dynamics. Potential energy cuts (PECs) along important vibrational modes have been calculated using the multi-state complete active space self-consistent field method with (10,9) active space. The important vibrational modes for the whole process were detected based on symmetry analysis and the strength of the vibronic couplings. The multi-mode multi-state model vibronic Hamiltonian is constructed by the parameters obtained from the fitting of ab initio PECs, including Morse and harmonic functions and vibronic couplings. The nonadiabatic quantum dynamics is performed using a four state multimode Hamiltonian with the multi-configuration time-dependent Hartree method. For the N-H stretching, Q42 turns out to be the most important among all normal modes. The third excited diabatic state shows an anharmonic, dissociative π-σ* character along Q42. The non-adiabatic coupling strength between the La and π-σ* plays a crucial role in controlling the photodissociation. The out-of-plane C-N-H bending, despite being directly related to the N-H group, is found to have a negligible contribution to the photodissociation process. Two timescales obtained from the population dynamics, 26 and 113 fs, are attributed to internal conversion from the second excited La state to the π-σ* states and photodissociation at the π-σ*, respectively, and are in good agreement with timescales obtained from previous experimental studies. Around 80% reaction probability for N-H fission of indole is recorded after 200 fs. This study of photofission of indole is crucial for understanding the photodynamics of similar large molecules.

吲哚非绝热光解动力学的多构型时变Hartree方法。
吲哚作为一种生物相关的丰富的发色团,是实验和计算研究的主要兴趣分子。本文采用非绝热量子动力学方法研究了吲哚的N-H光解动力学。利用具有(10,9)活动空间的多态完全活动空间自一致场法计算了重要振动模态上的势能切量(pec)。基于对称分析和振动耦合强度,检测了整个过程的重要振动模态。利用从头算PECs拟合得到的参数,包括莫尔斯函数、谐波函数和振动耦合,构造了多模多态模型振动哈密顿量。非绝热量子动力学用四态多模哈密顿量和多组态时变哈特里方法进行了计算。对于N-H拉伸,Q42是所有正态模态中最重要的。第三种激发非绝热态沿Q42表现出非调和解离π-σ*特征。La与π-σ*之间的非绝热耦合强度对控制光解作用起着至关重要的作用。面外C-N-H弯曲,尽管与N-H基团直接相关,但对光解过程的贡献可以忽略不计。由居群动力学得到的两个时间尺度26和113 fs分别归因于从第二激发态到π-σ*态的内部转换和π-σ*处的光解作用,与以往实验研究得到的时间尺度吻合较好。在200 fs后,吲哚的N-H裂变反应概率约为80%。吲哚光裂变的研究对于理解类似大分子的光动力学具有重要意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信