Laplacian filter attention with style transfer GAN for brain tumor MRI imputation.

IF 3.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Yoonho Na, Kyuri Kim, Hyungjoo Cho, Sung-Joon Ye, Hwiyoung Kim, Sung Soo Ahn, Ji Eun Park, Jimin Lee
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引用次数: 0

Abstract

Training deep neural networks with multi-domain data generally gives more robustness and accuracy than training with single domain data, leading to the development of many deep learning-based algorithms using multi-domain data. However, if part of the input data is unavailable due to missing or corrupted data, a significant bias can occur, a problem that may be relatively more critical in medical applications where patients may be negatively affected. In this study, we propose the Laplacian filter attention with style transfer generative adversarial network (LASTGAN) to solve the problem of missing sequences in brain tumor magnetic resonance imaging (MRI). Our method combines image imputation and image-to-image translation to accurately synthesize specific sequences of missing MR images. LASTGAN can accurately synthesize both overall anatomical structures and tumor regions of the brain in MR images by employing a novel attention module that utilizes a Laplacian filter. Additionally, among the other sub-networks, the generator injects a style vector of the missing domain that is subsequently inferred by the style encoder, while the style mapper assists the generator in synthesizing domain-specific images. We show that the proposed model, LASTGAN, synthesizes high quality MR images with respect to other existing GAN-based methods. Furthermore, we validate the use of LASTGAN for data imputation or augmentation through segmentation experiments.

基于风格迁移GAN的拉普拉斯滤波注意在脑肿瘤MRI植入中的应用。
使用多域数据训练深度神经网络通常比使用单域数据训练具有更高的鲁棒性和准确性,这导致了许多基于多域数据的深度学习算法的发展。但是,如果由于数据丢失或损坏而导致部分输入数据不可用,则可能出现严重偏差,这一问题在可能对患者产生负面影响的医疗应用中可能相对更为严重。在这项研究中,我们提出了带风格迁移生成对抗网络(LASTGAN)的拉普拉斯滤波注意力来解决脑肿瘤磁共振成像(MRI)中缺失序列的问题。我们的方法结合了图像插入和图像到图像的转换,以准确地合成缺失MR图像的特定序列。LASTGAN通过采用一种新颖的注意力模块,利用拉普拉斯滤波,可以准确地合成MR图像中大脑的整体解剖结构和肿瘤区域。此外,在其他子网络中,生成器注入缺失域的样式向量,随后由样式编码器推断,而样式映射器帮助生成器合成特定于域的图像。我们表明,与其他现有的基于gan的方法相比,所提出的模型LASTGAN可以合成高质量的MR图像。此外,我们通过分割实验验证了LASTGAN在数据插入或增强方面的使用。
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来源期刊
Scientific Reports
Scientific Reports Natural Science Disciplines-
CiteScore
7.50
自引率
4.30%
发文量
19567
审稿时长
3.9 months
期刊介绍: We publish original research from all areas of the natural sciences, psychology, medicine and engineering. You can learn more about what we publish by browsing our specific scientific subject areas below or explore Scientific Reports by browsing all articles and collections. Scientific Reports has a 2-year impact factor: 4.380 (2021), and is the 6th most-cited journal in the world, with more than 540,000 citations in 2020 (Clarivate Analytics, 2021). •Engineering Engineering covers all aspects of engineering, technology, and applied science. It plays a crucial role in the development of technologies to address some of the world''s biggest challenges, helping to save lives and improve the way we live. •Physical sciences Physical sciences are those academic disciplines that aim to uncover the underlying laws of nature — often written in the language of mathematics. It is a collective term for areas of study including astronomy, chemistry, materials science and physics. •Earth and environmental sciences Earth and environmental sciences cover all aspects of Earth and planetary science and broadly encompass solid Earth processes, surface and atmospheric dynamics, Earth system history, climate and climate change, marine and freshwater systems, and ecology. It also considers the interactions between humans and these systems. •Biological sciences Biological sciences encompass all the divisions of natural sciences examining various aspects of vital processes. The concept includes anatomy, physiology, cell biology, biochemistry and biophysics, and covers all organisms from microorganisms, animals to plants. •Health sciences The health sciences study health, disease and healthcare. This field of study aims to develop knowledge, interventions and technology for use in healthcare to improve the treatment of patients.
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