Toward Accuracy and Efficiency: A Polarizable Bond-Dipole-Based Water Model.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Jia-Yi Zhu,Xiao-Nan Jiang,Qiang Hao,Chang-Sheng Wang
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Abstract

A polarizable water model, PBFF-WAT-2025, is developed on the basis of chemical bond dipoles as the fundamental electrostatic sites. In this framework, both permanent and induced dipole contributions are assigned to each bond dipole, providing a physically motivated alternative to atom-centered multipole schemes. For computational efficiency, the induced dipole vectors are constrained to be collinear with the corresponding permanent dipoles. The potential loss of angular flexibility is compensated by the inclusion of orbital-interaction terms, through which the directionality of hydrogen bonding and the essential anisotropy in the electrostatics are incorporated. The accuracy of the model is assessed against CCSD(T) reference data for water clusters, yielding root-mean-square deviations of 1.39 kcal/mol for total interaction energies and 1.10 kcal/mol for three-body contributions. Thermodynamic and dynamic properties of bulk water, including density, enthalpy of vaporization, thermal expansion coefficient, isobaric heat capacity, isothermal compressibility, self-diffusion coefficient, and average dipole moment, are evaluated and shown to be in reasonable agreement with experiment. Although polarization is explicitly treated, computational overhead is minimized by the robustness of the bond-dipole representation, which allows dipole updates to be performed infrequently during molecular dynamics simulations. By balancing physical fidelity with efficiency, the PBFF-WAT-2025 model is demonstrated to provide a transferable and computationally practical framework for long-time scale and large-system simulations of aqueous and biomolecular systems.
向精度和效率:一个基于极化键-偶极子的水模型。
建立了以化学键偶极子为基本静电位的极化水模型pbff - wa -2025。在这个框架中,每个键偶极子都有永久和诱导偶极子的贡献,为原子中心的多极子方案提供了一种物理驱动的替代方案。为提高计算效率,感应偶极子矢量被约束为与相应的永久偶极子共线。通过包含轨道相互作用项来补偿角柔韧性的潜在损失,从而结合了氢键的方向性和静电中的基本各向异性。根据CCSD(T)参考数据对模型的精度进行了评估,总相互作用能的均方根偏差为1.39 kcal/mol,三体贡献的均方根偏差为1.10 kcal/mol。对体积水的密度、蒸发焓、热膨胀系数、等压热容、等温压缩系数、自扩散系数、平均偶极矩等热力学和动力学性质进行了评价,结果与实验结果基本一致。虽然明确地处理了极化,但由于键偶极子表示的鲁棒性,计算开销被最小化,这使得偶极子更新在分子动力学模拟中很少执行。通过平衡物理保真度和效率,pbff - wa -2025模型被证明为水和生物分子系统的长期尺度和大系统模拟提供了可转移和计算实用的框架。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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