The genome and stage-specific transcriptomes of the carrot weevil, Listronotus oregonensis, reveal adaptive mechanisms for host specialisation and symbiotic interactions.

IF 2.3 2区 农林科学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Dave T Ste-Croix, Annie-Ève Gagnon, Benjamin Mimee
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引用次数: 0

Abstract

Throughout their evolution, insects have become specialised to occupy diverse ecological niches. The carrot weevil, Listronotus oregonensis, is an important agricultural pest that exhibits a very specific host range. In this study, we characterised the genome and transcriptomes of each developmental stage of L. oregonensis and its Wolbachia endosymbiont to gain deeper knowledge of the genetic determinants controlling its biology. We annotated 14,637 genes and showed expression profiles across the developmental stages. We also compared orthologous genes between L. oregonensis and nine other species, with particular focus on chemoreceptors and detoxification genes. We identified 24 distinct odorant-binding protein genes and 41 genes for receptors involved in stimulus perception, relatively low numbers compared with other species, which would be consistent with a narrow host range. In contrast, we found a high number of detoxification genes, with significant expansion of certain gene families. Among the annotated genes, 46 were putatively acquired through horizontal gene transfer, with 17 showing strong evidence for this, including several cell-wall degrading enzymes. The phylogeny of a cytolethal distending toxin gene also suggests an initial transfer from a prokaryotic source and vertical dissemination in members of Curculionidae through recent evolution. The presence of the endosymbiotic bacterium Wolbachia (supergroup A) was confirmed in all tested L. oregonensis individuals from several regions in northeastern North America and showed very little diversity. This study enhances our understanding of the genomic, functional, and evolutionary aspects of a significant agricultural pest and makes important and useful databases available to the scientific community.

胡萝卜象鼻虫(Listronotus oregonensis)的基因组和阶段特异性转录组揭示了宿主特化和共生相互作用的适应机制。
在它们的进化过程中,昆虫已经变得专业化,占据了不同的生态位。胡萝卜象鼻虫(Listronotus oregonensis)是一种重要的农业害虫,具有非常特定的寄主范围。在这项研究中,我们对俄勒冈乳杆菌及其沃尔巴克氏体内共生体的每个发育阶段的基因组和转录组进行了表征,以深入了解控制其生物学的遗传决定因素。我们注释了14,637个基因,并显示了发育阶段的表达谱。我们还比较了俄勒冈l.o oregonensis与其他9个物种的同源基因,特别关注了化学受体和解毒基因。我们发现了24个不同的气味结合蛋白基因和41个参与刺激感知的受体基因,与其他物种相比数量相对较少,这与宿主范围窄一致。相反,我们发现了大量的解毒基因,某些基因家族显著扩展。在注释的基因中,46个推测是通过水平基因转移获得的,其中17个显示出强有力的证据,包括几种细胞壁降解酶。细胞致死膨胀毒素基因的系统发育也表明,它最初是从原核生物来源转移过来的,并通过最近的进化在Curculionidae成员中垂直传播。沃尔巴克氏菌(Wolbachia,超群A)存在于北美东北部几个地区的俄勒冈乳杆菌中,且多样性很小。这项研究提高了我们对一种重要农业害虫的基因组、功能和进化方面的理解,并为科学界提供了重要和有用的数据库。
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来源期刊
Insect Molecular Biology
Insect Molecular Biology 生物-昆虫学
CiteScore
4.80
自引率
3.80%
发文量
68
审稿时长
6-12 weeks
期刊介绍: Insect Molecular Biology has been dedicated to providing researchers with the opportunity to publish high quality original research on topics broadly related to insect molecular biology since 1992. IMB is particularly interested in publishing research in insect genomics/genes and proteomics/proteins. This includes research related to: • insect gene structure • control of gene expression • localisation and function/activity of proteins • interactions of proteins and ligands/substrates • effect of mutations on gene/protein function • evolution of insect genes/genomes, especially where principles relevant to insects in general are established • molecular population genetics where data are used to identify genes (or regions of genomes) involved in specific adaptations • gene mapping using molecular tools • molecular interactions of insects with microorganisms including Wolbachia, symbionts and viruses or other pathogens transmitted by insects Papers can include large data sets e.g.from micro-array or proteomic experiments or analyses of genome sequences done in silico (subject to the data being placed in the context of hypothesis testing).
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