A Conversational Large-Language-Model Tutor that Accelerates Machine-Learning Method Development in Routine Bioanalytical Workflows.

IF 2.8 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
ChemBioChem Pub Date : 2025-09-29 DOI:10.1002/cbic.202500678
An T H Le, Thomas Shvekher, Lewis Nguyen, Sergey N Krylov
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引用次数: 0

Abstract

As machine learning (ML) becomes increasingly relevant in experimental chemistry, many scientists face barriers to adoption due to limited training in ML. While AutoML platforms offer powerful capabilities, they lack the instructional scaffolding needed by users without an ML background. To address this gap, a lightweight, conversational assistant is presented that guides users through ML workflow design using plain-language dialog. Powered by OpenAI's GPT-4o and deployed via a Gradio interface, the assistant operates under a structured system prompt that simulates pedagogical reasoning. It behaves like a domain-specific tutor: helping users define ML goals, assess data structure, select models, evaluate metrics, and generate annotated Python code. A complete documentation of the development process is provided, allowing researchers to adapt the system for other domains. Herein, its utility is demonstrated in two representative case studies: 1) image classification of lateral flow immunoassay test strips for diagnostic readout; and 2) regression-based prediction of liquid chromatography-mass spectrometry retention times from molecular descriptors for small molecules. In both cases, lab members with no ML experience successfully developed working models guided solely by the assistant. By lowering the barrier to ML adoption in data-rich analytical workflows, this system offers a customizable workflow for building domain-specific assistants across experimental science.

会话式大语言模型导师,加速常规生物分析工作流程中的机器学习方法开发。
随着机器学习(ML)在实验化学中变得越来越重要,由于机器学习方面的培训有限,许多科学家面临着采用机器学习的障碍。虽然AutoML平台提供了强大的功能,但它们缺乏没有ML背景的用户所需的教学脚手架。为了解决这个问题,我们提出了一个轻量级的会话助手,它使用简单的语言对话框指导用户完成ML工作流设计。这款助手由OpenAI的gpt - 40提供支持,通过一个Gradio接口部署,在一个模拟教学推理的结构化系统提示下操作。它的行为就像一个特定领域的导师:帮助用户定义ML目标、评估数据结构、选择模型、评估指标,并生成带注释的Python代码。提供了开发过程的完整文档,允许研究人员将该系统用于其他领域。在这里,它的效用在两个代表性的案例研究中得到了证明:1)用于诊断读数的侧流免疫测定试纸的图像分类;2)基于回归预测小分子分子描述符的液相色谱-质谱保留时间。在这两种情况下,没有机器学习经验的实验室成员成功地开发了仅由助手指导的工作模型。通过降低在数据丰富的分析工作流程中采用机器学习的障碍,该系统为跨实验科学构建特定领域的助手提供了可定制的工作流程。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
ChemBioChem
ChemBioChem 生物-生化与分子生物学
CiteScore
6.10
自引率
3.10%
发文量
407
审稿时长
1 months
期刊介绍: ChemBioChem (Impact Factor 2018: 2.641) publishes important breakthroughs across all areas at the interface of chemistry and biology, including the fields of chemical biology, bioorganic chemistry, bioinorganic chemistry, synthetic biology, biocatalysis, bionanotechnology, and biomaterials. It is published on behalf of Chemistry Europe, an association of 16 European chemical societies, and supported by the Asian Chemical Editorial Society (ACES).
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